Ehrlichia canis DIVA (differentiate infected from vaccinated animals)

ABSTRACT

The invention provides Ehrlichia canis antigens that can be used to detect E. canis infected animals regardless of whether the animals have been vaccinated for E. canis. The invention also provides compositions and methods for determining the presence of E. canis antigens and antibodies.

PRIORITY

This application claims the benefit of U.S. Ser. No. 60/984,019, which was filed on Oct. 31, 2007, and is incorporated herein by reference in its entirety.

Sequence Listing

This document incorporates by reference a sequence listing in text format. The text file “04_(—)947DUS_SL.corrected for filing..txt” was created on Sep. 1, 2009, and is 85 KB.

BACKGROUND OF THE INVENTION

The Ehrlichia are obligate intracellular pathogens that infect circulating white blood cells in mammalian hosts. Ehrlichia canis can infect canines and humans and cause canine monocytic ehrlichiosis (CME) and human monocytic ehrlichiosis (HME), respectively. The canine disease is characterized by fever, lymphadenopathy, weight loss, and pancytopenia. In humans the disease is characterized by fever, headache, mylagia, and leukopenia. Early detection and treatment are important for treating both canine and human ehrlichiosis.

SUMMARY OF THE INVENTION

In one embodiment the invention provides a method of distinguishing between animals that have been (a) infected with Ehrlichia canis; and (b) animals that have not been infected with E. canis regardless of whether the animal has been vaccinated for E. canis. The method comprises

-   -   (a) contacting a biological sample from an animal with one or         more first purified polypeptides that do not specifically bind         to antibodies that are a component of the animal's immune         response to an E. canis vaccine; wherein the one or more first         purified polypeptides have at least 95% identity to SEQ ID         NOs:22-33 and wherein the one or more first purified E. canis         polypeptides specifically bind an antibody that is specific         for E. canis; and     -   (b) detecting whether antibodies in the biological sample         specifically bind to the one or more first purified E. canis         polypeptides.         If antibodies in the biological sample specifically bind to the         one or more first purified polypeptides, then the animal is         infected with E. canis. The one or more first purified         polypeptides can be about 15 to about 75 amino acids in length.         The one or more first purified polypeptides can be linked to a         heterologous amino acid sequence, an indicator reagent, an amino         acid spacer, an amino acid linker, a signal sequence, a stop         transfer sequence, a transmembrane domain, a protein         purification ligand, or a combination thereof. The method can         further comprise determining whether antibodies in the         biological sample specifically bind to one or more second         purified E. canis polypeptides that are an element of an E.         canis vaccine. If antibodies in the biological sample         specifically bind to the one or more first purified E. canis         polypeptides and specifically bind to the one or more second         purified E. canis polypeptides, then the animal has been         infected with E. canis and the vaccination status for E. canis         is unknown. If antibodies in the sample do not specifically bind         to the one or more first purified E. canis polypeptides and         specifically bind to the one or more second purified E. canis         polypeptides, then the animal has not been infected with E.         canis and has been vaccinated for E. canis. If antibodies in the         sample do not specifically bind to the one or more first         purified polypeptides and do not specifically bind to the one or         more second purified polypeptides then the animal has not been         vaccinated for E. canis and has not been infected by E. canis.

Yet another embodiment of the invention provides a method of determining an animal's vaccination and infection status for E. canis. The method comprises:

-   -   (a) contacting a biological sample from an animal with one or         more first purified polypeptides that do not specifically bind         to antibodies that are a component of the animal's immune         response to an E. canis vaccine, wherein the one or more first         purified polypeptides have at least 95% identity to SEQ ID         NOs:22-33 and wherein the one or more first purified         polypeptides specifically bind an antibody that is specific         for E. canis, and one or more second purified polypeptides that         specifically bind to an antibody that is a component of the         animal's immune response to an E. canis vaccine; and     -   (b) detecting whether antibodies in the biological sample         specifically bind to the one or more first purified polypeptides         and to the one or more second purified polypeptides.         If antibodies in the biological sample specifically bind to the         one or more first purified E. canis polypeptides and         specifically bind to the one or more second purified E. canis         polypeptides, then the animal has been infected with E. canis         and the vaccination status for E. canis is unknown. If         antibodies in the sample do not specifically bind to the one or         more first purified E. canis polypeptides and specifically bind         to the one or more second purified E. canis polypeptides, then         the animal has not been infected with E. canis and has been         vaccinated for E. canis. If antibodies in the sample do not         specifically bind to the one or more first purified polypeptides         and do not specifically bind to the one or more second purified         polypeptides then the animal has not been vaccinated for E.         canis and has not been infected by E. canis. The one or more         first purified polypeptides can be about 15 to about 75 amino         acids in length. The one or more first purified polypeptides can         be linked to a heterologous amino acid sequence, an indicator         reagent, an amino acid spacer, an amino acid linker, a signal         sequence, a stop transfer sequence, a transmembrane domain, a         protein purification ligand, or a combination thereof.

Still another embodiment of the invention provides a method for determining the presence of an antibody or antigen-binding fragments thereof that are specific for E. canis, in a test sample. The method comprises:

-   -   (a) contacting the test sample with one or more purified         polypeptides that have at least 95% identity to SEQ ID NOs:22-33         wherein the one or more purified polypeptides are about 15 to         about 75 amino acids in length, and wherein the one or more         first purified polypeptides specifically bind an antibody that         is specific for E. canis, under conditions suitable for specific         binding of the one or more purified polypeptides to the         antibodies or antigen-binding fragments thereof, and     -   (b) detecting the presence of specific binding of the one or         more purified polypeptides to the antibodies or antigen-binding         fragments thereof.         The presence of specific binding of the one or more purified         polypeptides to the antibodies or antigen-binding fragments         indicates the presence of the antibodies or antigen-binding         fragments thereof specific for E. canis in the test sample. The         one or more purified polypeptides can be linked to a         heterologous amino acid sequence, an indicator reagent, an amino         acid spacer, an amino acid linker, a signal sequence, a stop         transfer sequence, a transmembrane domain, a protein         purification ligand, or a combination thereof. The method can         further comprise detecting the amount of specific binding. The         one or more purified polypeptides can be immobilized to a solid         support.

Even another embodiment of the invention provides a composition comprising:

-   -   (a) one or more purified polypeptides consisting of SEQ ID         NO:22-33; or     -   (b) one or more purified polypeptides having at least 95%         identity to SEQ ID NOs:22-33 wherein the one or more purified         polypeptides are about 15 to about 75 amino acids in length, and         wherein the one or more purified polypeptides specifically bind         an antibody that is specific for E. canis;     -   (c) SEQ ID NO:33, wherein the X at position 1 is absent or C,         the X at position 4 is H or Q, the X at position 25 is D or G,         and the X at position 36 is E or G;     -   (d) amino acids 1-27 of SEQ ID NO:33, wherein the X at position         1 is C, the X at position 4 is H, the X at position 25 is D or         G;     -   (e) amino acids 13-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G; and a C is         optionally present at the amino terminus;     -   (f) amino acids 24-49 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (g) amino acids 1-27 of SEQ ID NO:33, wherein the X at position         1 is C or absent, and wherein the X at position 25 is D or G;     -   (h) amino acids 13-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (i) amino acids 24-49 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (j) amino acids 13-27 of SEQ ID NO:33, wherein the X at position         25 is D or G, and a C is optionally present at the amino         terminus;     -   (k) amino acids 24-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (l) amino acids 13-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (m) amino acids 24-49 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (n) amino acids 24-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus; or     -   (o) combinations of (a)-(n).         The one or more purified polypeptides can be in a multimeric         form. The one or more purified polypeptides can be linked to a         heterologous protein, an indicator reagent, an amino acid         spacer, an amino acid linker, a signal sequence, a stop transfer         sequence, a transmembrane domain, a protein purification ligand,         or a combination thereof.

Another embodiment of the invention provides a method of generating an immune response in an animal comprising administering one or more purified polypeptides having at least 95% identity to SEQ ID NOs:22-33 or a combination thereof to the animal, wherein the one or more purified polypeptides generate an immune response in the animal. The one or more purified polypeptides can be about 15 to about 75 amino acids in length. The one or more purified polypeptides can be in a multimeric form. The one or more purified polypeptides can be linked to a heterologous protein, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.

Still another embodiment of the invention provides a method for the prophylaxis, treatment, or amelioration of an Ehrlichia canis infection in an animal comprising administering to the animal:

-   -   (a) one or more purified polypeptides having at least 95%         sequence identity to SEQ ID NOs:22-33, or a combination thereof;         or     -   (b) one or more nucleic acids encoding one or more purified         polypeptides comprising SEQ ID NOs:22-33, or a combination         thereof; or     -   (c) one or more antibodies that specifically bind one or more         purified polypeptides comprising SEQ ID NOs:22-33, or a         combination thereof;     -   whereby the E. canis infection is prevented, ameliorated, or         treated.

Yet another embodiment of the invention provides a method of monitoring treatment of an E. canis infection in a patient comprising: (a) determining the level of anti-E. canis antibodies in a first sample from a patient prior to or in the early stages of a treatment for an E. canis infection by a method of claim 10; (b) determining the level of anti-E. canis antibodies in a second sample from the patient after treatment is effected by a method of claim 10; and (c) comparing the amount of anti-E. canis antibodies in the first sample with the amount of anti-E. canis antibodies in the second sample to assess a change and thereby monitor treatment.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows SNAP® 3Dx® Assay (reversible flow chromatographic assay) evaluation of laboratory beagles. The SNAP® device used as described by manufacturer. “Pre” sample is from day 0. “Post” sample is from day 42. The E. canis positive spot became positive in all 4 dogs for the day 42 sample. Similar results were observed for the day 70 sample.

FIG. 2 shows a gel of E. canis proteins separated using 2D gel electrophoresis. Stained with BIOSAFE™ Coomassie Blue (Bio-Rad Inc.).

FIG. 3 shows a western blot of E. canis proteins using dog sera harvested at day 0. The plasma dilution is 1:100. These dogs were negative for reactivity with E. canis antigens.

FIG. 4 shows a western blot of E. canis proteins using dog sera from a pool of four vaccinated animals. The sera dilution is 1:100.

FIG. 5 shows a western blot of E. canis proteins using dog plasma from a pool of infected animals. The sera dilution is 1:1000.

FIG. 6 shows a western blot of six different E. canis DIVA antigens expressed in E. coli and probed with either dog sera from a pool of four infected animals (A) or dog sera pooled from four vaccinated animals (B). Sera dilutions were 1:100 for vaccinated animals or 1:500 for the infected animals. The DIVA antigens represented include: (1) 200 kDa antigen, (2) Ribosomal protein L1, (3a and 3b) “ATPase”—two different segments, (4) 120 kDa antigen, (5) Heat shock proteins/p16 antigen.

FIG. 7 demonstrates that cloned p16 antigen is recognized by sera from dogs infected with E. canis but not those that were vaccinated (shown as “challenged sera”). Lysates from uninduced (U) or induced (I) bacteria transformed with a vector expressing the p16 antigen or the original genomic fragment (+C) were separated by SDS-PAGE and transferred to nitrocellulose for western blot analysis.

FIG. 8 demonstrates detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO:23 in dogs over a time course including infection, treatment, and recovery.

FIGS. 9A-B demonstrate detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO:10 in two dogs that have not been vaccinated for E. canis over a time course of infection.

FIGS. 10A-C demonstrate detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO:10 in three dogs that have been vaccinated (RIBI adjuvant) for E. canis over a time course of infection.

FIGS. 11A-C demonstrate detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO: 10 in three dogs that have been vaccinated (RIBI+BCG adjuvant) for E. canis over a time course of infection.

DETAILED DESCRIPTION OF THE INVENTION

Ehrlichia canis antigens are disclosed that can be used to differentiate E. canis naturally-infected animals from animals that have been vaccinated against with E. canis. “Vaccinated” means the administration of a vaccine composition that can prevent or ameliorate the effects of infection by a pathogen by establishing or improving immunity to the pathogen. Vaccine compositions can comprise dead, inactivated or attenuated pathogens or purified products or portions of the pathogen. Vaccination is not necessarily 100% effective.

Before describing the present invention in detail, a number of terms will be defined. As used herein, the singular forms “a,” “an”, and “the” include plural referents unless the context clearly dictates otherwise.

As used herein, the term “polypeptide” refers to a compound of a single chain or a complex of two or more chains of amino acid residues linked by peptide bonds. The chain(s) may be of any length and can comprise a fusion protein. Although “protein” is often used in reference to relatively large polypeptides, and “peptide” is often used in reference to small polypeptides, usage of these terms in the art overlaps and varies. The term “polypeptide” as used herein thus refers interchangeably to peptides, polypeptides, proteins, or fusion proteins unless otherwise noted. The term “amino acid” refers to a monomeric unit of a peptide, polypeptide or protein. The term “polypeptides” can refer to one or more of one type of polypeptide (a set of polypeptides). “Polypeptides” can also refer to mixtures of two or more different types of polypeptides (a mixture of polypeptides). The terms “polypeptides” or “polypeptide” can each also mean “one or more polypeptides.”

Polypeptides of the invention can be “isolated.” An isolated polypeptide is a polypeptide that is not immediately contiguous with one or both of the amino and carboxy flanking amino acid sequences that it is naturally associated with. In particular, “an isolated polypeptide shown in SEQ ID NOs:22-33” means that the polypeptide is not immediately contiguous with one or both of the amino and carboxy flanking amino acid sequences that it is naturally associated with (where the polypeptide is a naturally occurring polypeptide) in an E. canis protein molecule.

As used herein, “antigen” as used herein refers to a molecule against which a subject can initiate a humoral and/or cellular immune response. Antigens can be any type of biologic molecule including, for example, simple intermediary metabolites, sugars, lipids, and hormones as well as macromolecules such as complex carbohydrates, phospholipids, nucleic acids and proteins. In the compositions and methods of the invention, an antigen can be a polypeptide, e.g., one comprising at least about six or more amino acids.

As used herein, a “derivative” of an E. canis antigen polypeptide, or an antigen or polypeptide that is “derived from” an E. canis antigen or polypeptide, refers to a antigen or polypeptide in which the native form has been purified, modified or altered. Such modifications include, but are not limited to: amino acid substitutions, modifications, additions or deletions; alterations in the pattern of lipidation, glycosylation or phosphorylation; reactions of free amino, carboxyl, or hydroxyl side groups of the amino acid residues present in the polypeptide with other organic and non-organic molecules; and other modifications, any of which may result in changes in primary, secondary or tertiary structure.

A “biological sample” is any sample from an animal that is expected to contain immunoglobulins. For example, a biological sample can be plasma, blood, serum, saliva, urine, feces, wound exudate, cerebrospinal fluid (CSF), semen, sputum, as well as tissue extracts, and cell extracts. In one embodiment of the invention a test sample can be obtained from an animal such as a horse, dog, cow, llama, sheep, goat, deer, elk, rodent or any other animal. A human is considered to be an animal herein. These examples are not to be construed as limiting the sample types or animals that are applicable to the present invention.

An “infection,” such as in an E. canis infection, means that an animal has been exposed to E. canis, regardless of whether the animal exhibits clinical symptoms of E. canis. A natural infection refers to an exposure that occurs as a result of one of the natural transmission methods for E. canis, such as transmission by ticks. An infection does not include an exposure to E. canis through vaccination.

A “polypeptide or antigen that is not an element of an E. canis vaccine” is any E. canis polypeptide or antigen that is not present in a particular E. canis vaccine or vaccines. A “polypeptide or antigen that is not an element of an E. canis vaccine” is also any E. canis polypeptide or antigen that is not an immunogenically active portion of an E. canis vaccine. That is, the polypeptide or antigen may be present in the vaccine, but an immune response against the polypeptide or antigen (e.g., the generation of antibodies that specifically bind to the polypeptide or antigen) is not generated in response to administration of the E. canis vaccine. Elements of the vaccine(s) can be portions of a subunit vaccine that includes less than the entire bacterium; these portions can be chemically synthesized or expressed recombinantly before becoming part of the vaccine, and these portions can be encoded by one or more vectors that express an immunogenic composition in vivo.

An “antibody that is a component of an animal's immune response to an E. canis vaccine” refers to an antibody that is elicited as the result of a vaccination with an E. canis vaccine. These antibodies can be identical to or similar to antibodies elicited as the result of a natural E. canis infection. These antibodies will be maintained at a sufficient titer and so as to provide a protective and neutralizing effect against the bacteria. A successful vaccination produces a measurable level of the antibody (or antibodies) that is elicited by a component of the E. canis vaccine. Examples of E. canis antigens that elicit antibodies that can be a component of an animal's immune response to an E. canis vaccine are p28-1, p28-2, p28-3, p28-4, p28-5, p28-6, p28-7, p28-8, p28-9 (see, U.S. Pat. Nos. 6,660,269; 6,458,942; 6,403,780; 6,392,023), proA, ProB, mmpA, cytochrome oxidase (see, U.S. Pat. Publ. 20040170972), p43 (see, U.S. Pat. No. 6,355,777), which is the N-terminal portion of p153, a glycoprotein (see, U.S. Pat. Publ. 2004/0121433), p153, and p30-1, p30-2, p30-3, p30-4, p30-5, p30-6, p30-7, p30-8, p30-9, p30-10, p30-11, p30-12, p30-13, p30-14, p30-15, p30-16, p30-17, p30-18, p30-19, p30-20 (Ohashi et al. 2001, Infection and Immunity 69(4): 2083-91).

An immune response is the development in an organism of a cellular and/or antibody mediated immune response to an antigen such as a polypeptide. Usually such a response includes, but is not limited to, one or more of the following: production of antibodies, B cells, helper T cells, suppressor T cells, and/or cytotoxic T cells. An immune response can be detected using any of several assays known to those with skill in the art.

Polypeptides of the Invention

Biological samples from animals that have been vaccinated against E. canis have the potential for producing a positive result in a test for E. canis infection due to the presence of antibodies produced in response to the vaccine. In one aspect, the invention provides a method of distinguishing between animals that have been infected with E. canis and those that have not been infected with E. canis, regardless of whether the animal has been vaccinated for E. canis. Methods include contacting a biological sample from the animal with an antigen derived from E. canis that does not specifically bind to an antibody that is a component of the animal's antibody response to a particular E. canis vaccine, but that does specifically bind to an antibody that is generated in response to infection by E. canis.

The development of E. canis antibodies in an animal against a vaccine is dependent upon the particular vaccine used to vaccinate the animal. The difference in the immune response between animals that are vaccinated against E. canis and animals that are naturally or experimentally infected with E. canis provides a means for determining whether an animal is naturally or experimentally infected with E. canis, regardless of whether the animal has been vaccinated for E. canis. Therefore, using the methods of the invention, animals that have been infected with E. canis can be distinguished from animals that have not been infected with E. canis and/or have been vaccinated against E. canis. Antigens of the invention, their immunodominant regions, and epitopes can be used in the methods of the invention. These compositions can be referred to as E. canis DIVA antigens (Differentiate Infected from Vaccinated Animals). An E. canis DIVA antigen induces an immune response, e.g., the production of specific antibodies, in an animal that is different from the immune response induced in the animal by a particular E. canis vaccine.

Accordingly, detection of specific binding between an E. canis DIVA antigen and an antibody that is not a component of an animal's immune response to a particular vaccine can indicate a natural or experimental E. canis infection. The absence of such binding can indicate the absence of E. canis infection. In addition, a second, separate antigen, such as an E. canis antigen that specifically binds an antibody that is a component of an animal's immune response to a particular E. canis vaccine, can be used to detect antibodies produced in response to vaccination (herein referred to as “an E. canis vaccine antigen”). An E. canis vaccine antigen not only specifically binds an antibody that is a component of an animal's immune response to a particular E. canis vaccine, but can also specifically bind to antibodies that are a component of an animal's immune response to infection by E. canis. If an antibody specific for an E. canis vaccine antigen is detected, then the animal has been vaccinated and/or infected. The detection of neither antibody indicates no infection and no vaccination. As such, various combinations of separate capture reagents can lead to a determination of the vaccination and/or infection status of the test subject.

In one aspect, a method of the invention includes contacting a biological sample from an animal with an antigen that is a part of the E. canis bacteria, but is not an element of a particular E. canis vaccine. In another aspect, a method of the invention includes contacting a biological sample from an animal with an antigen that is present in or part of E. canis bacteria and an E. canis vaccine, wherein an immune response against the antigen (e.g., the generation of antibodies that specifically bind to the antigen) is generated in response to infection with the E. canis bacteria, but not in response to administration of the E. canis vaccine. In another aspect, a biological sample from an animal is analyzed to detect the presence or absence of antibodies specific for an E. canis DIVA antigen, and the presence or absence of antibodies specific for an E. canis vaccine antigen. It is then determined that the animal has not been infected and has not been or vaccinated by determining the absence of such antibodies.

In one aspect of the invention, a DIVA antigen is not an element of an E. canis vaccine. In another aspect of the invention, a DIVA antigen is part of an E. canis vaccine, but an immune response (e.g., the generation of an antibody that specifically binds the DIVA antigen) is not generated in response to administration of the E. canis vaccine. The vaccination or infection status of an animal can be determined by detecting whether antibodies in the sample specifically bind to one or more E. canis vaccine antigens and whether antibodies in the sample specifically bind to one or more DIVA antigens. If antibodies in the sample specifically bind to one or more of the vaccine antigens and specifically bind to one or more of the DIVA antigens, then the animal is infected with E. canis and the vaccination status of the animal is unknown. If antibodies in the sample specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is vaccinated for E. canis and is not infected with E. canis. If antibodies in the sample do not specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is not infected with E. canis and is not vaccinated for E. canis.

One aspect of the invention provides a method of distinguishing between animals that have been (a) infected with Ehrlichia canis; and (b) animals that have not been infected with E. canis regardless of their E. canis vaccine status. The method comprises contacting a biological sample from an animal with a first purified E. canis polypeptide that does not substantially specifically bind to antibodies that are a component of the animal's immune response to an E. canis vaccine; wherein the first purified E. canis polypeptide comprises SEQ ID NOs:22-33 or combinations thereof and detecting whether antibodies in the sample specifically bind to the first purified E. canis polypeptide. If antibodies in the sample specifically bind to the first purified E. canis polypeptide, then the animal is infected with E. canis; and if antibodies in the sample do not substantially specifically bind to the first purified E. canis polypeptide, then the animal is not infected with E. canis.

The method can further comprise determining whether antibodies in the sample specifically bind to a second purified E. canis polypeptide that comprises an E. canis vaccine antigen. If antibodies in the sample specifically bind to one or more of the E. canis vaccine antigens and specifically bind to one or more of the DIVA antigens, then the animal is infected with E. canis and the vaccination status of the animal is unknown. If antibodies in the sample specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is vaccinated for E. canis and is not infected with E. canis. If antibodies in the sample do not specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is not infected with E. canis and is not vaccinated for E. canis. In one embodiment of the invention antibodies in test samples do not substantially specifically bind to DIVA antigens and/or E. canis vaccine antigens. Substantially no specific binding is an amount of binding that would be considered a negative result by one of skill in the art.

One aspect of the invention provides a method of determining an animal's vaccination and infection status for E. canis. The method comprises:

-   -   (a) contacting a biological sample from an animal with a first         purified polypeptide that does not substantially specifically         bind to antibodies that are a component of the animal's immune         response to an E. canis vaccine, wherein the first purified         polypeptide comprises SEQ ID NOs:22-33 or combinations thereof,         and a second polypeptide that specifically binds to an antibody         that is a component of the animal's immune response to an E.         canis vaccine;     -   (b) detecting whether antibodies in the sample specifically bind         to the first and second purified polypeptides;         wherein if antibodies in the biological sample specifically bind         to the one or more first purified E. canis polypeptides and         specifically bind to the one or more second purified E. canis         polypeptides, then the animal has been infected with E. canis         and the vaccination status for E. canis is unknown; wherein if         antibodies in the sample do not specifically bind to the one or         more first purified E. canis polypeptides and specifically bind         to the one or more second purified E. canis polypeptides, then         the animal has not been infected with E. canis and has been         vaccinated for E. canis; and wherein if antibodies in the sample         do not specifically bind to the one or more first purified         polypeptides and do not specifically bind to the one or more         second purified polypeptides then the animal has not been         vaccinated for E. canis and has not been infected by E. canis.

Table 1 demonstrates the infection and/or vaccination status of animals that can be determined with E. canis DIVA antigens and E. canis vaccine antigens. “Not Done” in Table 1 means that a particular test was not completed and therefore no result is available. For example if a biological sample from an animal is tested with an E. canis DIVA antigen and the result is positive and no test is completed with an E. canis vaccine antigen, then the animal's status would be infected, but vaccination status unknown.

TABLE 1 Infection/Vaccination Status Result with E. canis Result with E. canis of Animal DIVA antigen vaccine antigen* Infected, vaccination status Positive Not Done unknown Infected, vaccination status Positive Positive unknown Vaccinated, not infected Negative Positive Vaccinated and/or infected Not Done Positive Not infected, not vaccinated Negative Negative Not infected, vaccination Negative Not Done status unknown Not vaccinated, not infected Not Done Negative *An E. canis vaccine antigen specifically binds an antibody that is a component of an animal's immune response to a particular E. canis vaccine. An E. canis vaccine antigen not only specifically binds an antibody that is a component of an animal's immune response to a particular E. canis vaccine, but can also bind to antibodies that are a component of an animal's immune response to infection by E. canis.

Another aspect of the invention provides a method for determining the presence or absence of an antibody or antigen-binding fragment thereof, in a test sample, wherein the antibody or antigen-binding fragment thereof specifically binds to a purified polypeptide consisting of SEQ ID NOs:10, 22-33 or combinations thereof. The method comprises contacting the test sample with a purified polypeptide comprising SEQ ID NO:10, 22-33 or combinations thereof under conditions suitable for specific binding of the purified polypeptide to the antibody or antigen-binding fragment thereof, and detecting the presence or absence of specific binding. The presence of specific binding indicates the presence of the antibody or antigen-binding fragment thereof, and the absence of specific binding indicates the absence the antibody or antigen-binding fragment thereof.

Vaccines may not be completely effective at preventing or ameliorating infection. Therefore, it is desirable to have a method to determine if a vaccinated animal has become infected despite the vaccination. SEQ ID NOs:10, 22-33 do not detect anti-E. canis antibodies in dogs that have been vaccinated for E. canis and that are not infected with E. canis. SEQ ID NOs:10, 22-33 can be used to detect E. canis infection in dogs that have received or have not received an E. canis vaccine. In one embodiment of the invention, the animal becomes infected with E. canis after receiving an E. canis vaccine and detection of E. canis is still possible.

Another aspect of the invention comprises a composition comprising or consisting of one or more purified polypeptides comprising or consisting of SEQ ID NOs:10, 22-33 or combinations thereof. A polypeptide of the invention can be post-translationally modified. A purified polypeptide is a polypeptide preparation that is substantially free of cellular material, other types of polypeptides, chemical precursors, chemicals used in synthesis of the polypeptide, or combinations thereof. A polypeptide preparation that is substantially free of cellular material, culture medium, chemical precursors, chemicals used in synthesis of the polypeptide, etc., has less than about 30%, 20%, 10%, 5%, 1% or more of other polypeptides, culture medium, chemical precursors, and/or other chemicals used in synthesis. Therefore, a purified polypeptide is about 70%, 80%, 90%, 95%, 99% or more pure. A purified polypeptide does not include unpurified or semi-purified cell extracts or mixtures of polypeptides that are less than 70% pure.

One embodiment of the invention provides a purified polypeptide comprising SEQ ID NOs:22-33, wherein the polypeptide consists of less than about 50, 45, 40, 35, 30, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6 or less (or any range between 50 and 6) contiguous naturally occurring Ehrlichia canis amino acids (i.e, the purified polypeptide does not encompass the entire naturally occurring Ehrlichia canis polypeptide). Naturally occurring Ehrlichia canis amino acids are any polypeptides naturally produced by an Ehrlichia canis organism. In one embodiment of the invention a purified polypeptide comprises SEQ ID NOs:22-33, wherein the polypeptide comprises more than about 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 30, 35, 40, 50, 60, 70, 80, 90, 100, or more contiguous naturally occurring Ehrlichia canis amino acids (or any range between about 6 and 100 amino acids).

The fact that polypeptides SEQ ID NOs:22-33 are smaller than a full length Ehrlichia canis polypeptide is important because smaller polypeptides can have greater specificity and/or sensitivity than full length polypeptides in detection assays. Additionally, these smaller polypeptides can be less expensive to manufacture, and may be obtained at greater purity than the full length polypeptide.

One embodiment of the invention provides a purified polypeptide that is less than about 50, 45, 40, 35, 30, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7 or 6 contiguous naturally Ehrlichia canis amino acids and greater than about 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 30, 35, 40, 50, 60, 70, 80, 90, or 100 contiguous amino acids of SEQ ID NOs:22-33 (or any range between 6 and 100 amino acids). Therefore, a polypeptide of the invention can be, for example, about 15 to about 30; about 15 to about 50; or about 15 to about 100 amino acids in length.

Variant polypeptides are at least about 79%, 80%, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99% or more identical to the polypeptide sequences shown in SEQ ID NOs:22-33 and are also polypeptides of the invention. Variant polypeptides have one or more conservative amino acid variations or other minor modifications and retain biological activity, i.e., are biologically functional equivalents. A biologically active equivalent has substantially equivalent function when compared to the corresponding wild-type polypeptide. In one embodiment of the invention a polypeptide has about 1, 2, 3, 4, 5, 10, 20 or less conservative amino acid substitutions.

These polypeptides may have additional amino acid residues beyond those in SEQ ID NOs:22-33. That is, the polypeptides may have additional amino acids residues added onto the 5′ or 3′ end of the polypeptides, while the sequence identity along 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 40, 45, or 48 contiguous amino acids (depending on the length of the specific SEQ ID NO) of SEQ ID NOs:22-33 is at least about 95%. The additional amino acids added onto the 5′ or 3′ end of the polypeptides are not considered to affect the sequence identity percentage. The additional amino acids can be those that naturally occur or can be non-naturally occurring amino acids. The polypeptides can be, for example, from about 15 to about 50 or about 75 amino acids in length.

Variant polypeptides have one or more conservative amino acid substitutions, deletions additions or other minor modifications and retain biological activity, i.e., are biologically functional equivalents. A biologically active equivalent has substantially equivalent function when compared to the corresponding wild-type polypeptide.

Percent sequence identity has an art recognized meaning and there are a number of methods to measure identity between two polypeptide or polynucleotide sequences. See, e.g., Lesk, Ed., Computational Molecular Biology, Oxford University Press, New York, (1988); Smith, Ed., Biocomputing: Informatics And Genome Projects, Academic Press, New York, (1993); Griffin & Griffin, Eds., Computer Analysis Of Sequence Data, Part I, Humana Press, New Jersey, (1994); von Heinje, Sequence Analysis In Molecular Biology, Academic Press, (1987); and Gribskov & Devereux, Eds., Sequence Analysis Primer, M Stockton Press, New York, (1991). Methods for aligning polynucleotides or polypeptides are codified in computer programs, including the GCG program package (Devereux et al., Nuc. Acids Res. 12:387 (1984)), BLASTP, BLASTN, FASTA (Atschul et al., J. Molec. Biol. 215:403 (1990)), and Bestfit program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer Group, University Research Park, 575 Science Drive, Madison, Wis. 53711) which uses the local homology algorithm of Smith and Waterman (Adv. App. Math., 2:482-489 (1981)). For example, the computer program ALIGN which employs the FASTA algorithm can be used, with an affine gap search with a gap open penalty of −12 and a gap extension penalty of −2.

When using any of the sequence alignment programs to determine whether a particular sequence is, for instance, about 95% identical to a reference sequence, the parameters are set such that the percentage of identity is calculated over the full length of the reference polynucleotide or polypeptide and that gaps in identity of up to 5% of the total number of nucleotides or amino acids in the reference polynucleotide are allowed.

Variant polypeptides can generally be identified by modifying one of the polypeptide sequences of the invention, and evaluating the properties of the modified polypeptide to determine if it is a biological equivalent. A variant is a biological equivalent if it reacts substantially the same as a polypeptide of the invention in an assay such as an immunohistochemical assay, an enzyme-linked immunosorbent Assay (ELISA), a radioimmunoassay (RIA), immunoenzyme assay or a western blot assay, e.g. has 90-110% of the activity of the original polypeptide. In one embodiment, the assay is a competition assay wherein the biologically equivalent polypeptide is capable of reducing binding of the polypeptide of the invention to a corresponding reactive antigen or antibody by about 80, 95, 99, or 100%. An antibody that specifically binds a corresponding wild-type polypeptide also specifically binds the variant polypeptide.

A conservative substitution is one in which an amino acid is substituted for another amino acid that has similar properties, such that one skilled in the art of peptide chemistry would expect the secondary structure and hydropathic nature of the polypeptide to be substantially unchanged. In general, the following groups of amino acids represent conservative changes: (1) ala, pro, gly, glu, asp, gln, asn, ser, thr; (2) cys, ser, tyr, thr; (3) val, ile, leu, met, ala, phe; (4) lys, arg, his; and (5) phe, tyr, trp, his.

A polypeptide of the invention can further comprise a signal (or leader) sequence that co-translationally or post-translationally directs transfer of the protein. The polypeptide can also comprise a linker or other sequence for ease of synthesis, purification or identification of the polypeptide (e.g., poly-His), or to enhance binding of the polypeptide to a solid support. For example, a polypeptide can be conjugated to an immunoglobulin Fc region or bovine serum albumin.

A polypeptide can be covalently or non-covalently linked to an amino acid sequence to which the polypeptide is not normally associated with in nature, i.e., a heterologous amino acid sequence. A heterologous amino acid sequence can be from a non-E. canis organism, a synthetic sequence, or an E. canis sequence not located at the carboxy or amino terminus of a polypeptide of the invention in nature. Additionally, a polypeptide can be covalently or non-covalently linked to compounds or molecules other than amino acids such as indicator reagents. A polypeptide can be covalently or non-covalently linked to an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof. A polypeptide can also be linked to a moiety (i.e., a functional group that can be a polypeptide or other compound) that enhances an immune response (e.g., cytokines such as IL-2), a moiety that facilitates purification (e.g., affinity tags such as a six-histidine tag, trpE, glutathione, maltose binding protein), or a moiety that facilitates polypeptide stability (e.g., polyethylene glycol; amino terminus protecting groups such as acetyl, propyl, succinyl, benzyl, benzyloxycarbonyl or t-butyloxycarbonyl; carboxyl terminus protecting groups such as amide, methylamide, and ethylamide). In one embodiment of the invention a protein purification ligand can be one or more C amino acid residues at, for example, the amino terminus or carboxy terminus or both termini of a polypeptide of the invention. An amino acid spacer is a sequence of amino acids that are not associated with a polypeptide of the invention in nature. An amino acid spacer can comprise about 1, 5, 10, 20, 100, or 1,000 amino acids.

If desired, a polypeptide of the invention can be part of a fusion protein, which can also contain other amino acid sequences, such as amino acid linkers, amino acid spacers, signal sequences, TMR stop transfer sequences, transmembrane domains, as well as ligands useful in protein purification, such as glutathione-S-transferase, histidine tag, and Staphylococcal protein A, or combinations thereof. More than one polypeptide of the invention can be present in a fusion protein. Fragments of polypeptides of the invention can be present in a fusion protein of the invention. A polypeptide of the invention can be operably linked to non-Ehrlichia canis proteins or non-Ehrlichia canis p16 proteins to form fusion proteins. A fusion protein of the invention can comprise one or more polypeptides shown in SEQ ID NO: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or fragments thereof, or combinations thereof. A fusion protein does not occur in nature. The term “operably linked” means that the polypeptide of the invention and the other polypeptides are fused in-frame to each other either to the N-terminus or C-terminus of the polypeptide of the invention.

Polypeptides of the invention can be in a multimeric form. That is, a polypeptide can comprise one or more copies of SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or a combination thereof. A multimeric polypeptide can be a multiple antigen peptide (MAP). See e.g., Tam, J. Immunol. Methods, 196:17-32 (1996).

Polypeptides of the invention can comprise an antigen that is recognized by an antibody specific for E. canis. The antigen can comprise one or more epitopes (i.e., antigenic determinants). An epitope can be a linear epitope, sequential epitope or a conformational epitope. Epitopes within a polypeptide of the invention can be identified by several methods. See, e.g., U.S. Pat. No. 4,554,101; Jameson & Wolf, CABIOS 4:181-186 (1988). For example, a polypeptide of the invention can be isolated and screened. A series of short peptides, which together span an entire polypeptide sequence, can be prepared by proteolytic cleavage. By starting with, for example, 30-mer polypeptide fragments (or smaller fragments), each fragment can be tested for the presence of epitopes recognized in an ELISA. For example, in an ELISA assay an E. canis polypeptide, such as a 30-mer polypeptide fragment, is attached to a solid support, such as the wells of a plastic multi-well plate. A population of antibodies are labeled, added to the solid support and allowed to bind to the unlabeled antigen, under conditions where non-specific absorption is blocked, and any unbound antibody and other proteins are washed away. Antibody binding is detected by, for example, a reaction that converts a colorless substrate into a colored reaction product. Progressively smaller and overlapping fragments can then be tested from an identified 30-mer to map the epitope of interest.

In one embodiment of the invention, a DIVA antigen comprises an immunodominant epitope or region. That is, an epitope or region that more frequently elicits and binds to antibodies in a population thereof when compared with other epitopes. An antigen can have one or more immunodominant epitopes. Immunodominant epitopes can be mapped on, for example, a polypeptide after the polypeptide has been administered to an animal or prior to such administration. See e.g., U.S. Pat. Publ. 2004/0209324.

A polypeptide of the invention can be produced recombinantly. A polynucleotide encoding a polypeptide of the invention can be introduced into a recombinant expression vector, which can be expressed in a suitable expression host cell system using techniques well known in the art. A variety of bacterial, yeast, plant, mammalian, and insect expression systems are available in the art and any such expression system can be used. Optionally, a polynucleotide encoding a polypeptide can be translated in a cell-free translation system. A polypeptide can also be chemically synthesized or obtained from E. canis cells.

An immunogenic polypeptide of the invention can comprise an amino acid sequence shown in SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or fragments thereof. An immunogenic polypeptide can elicit antibodies or other immune responses (e.g., T-cell responses of the immune system) that recognize epitopes of a polypeptide having SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, or 33. An immunogenic polypeptide of the invention can also be a fragment of a polypeptide that has an amino acid sequence shown in SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, or 33. An immunogenic polypeptide fragment of the invention can be about 50, 45, 40, 35, 30, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6 or less (or any range between about 50 and about 6) amino acids in length. An immunogenic polypeptide fragment of the invention can be more than about 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 30, 35, 40, 50, 60, 70, 80, 90, 100, or more amino acids in length (or any range between about 6 and about 100 amino acids).

Antibodies specific for E. canis can be detected in biological fluids or tissues by any method known in the art using the polypeptides of the invention. The simplest methods generally are immunoassay methods. One such method is a competition-based method wherein serum samples are preincubated with an E. canis antigen that is not an element of an E. canis vaccine (e.g., an E. canis DIVA antigen), and then added to a solid phase, such a microtiter plate, having an immobilized monoclonal antibody specific for the E. canis DIVA antigen. Antibodies specific for the E. canis DIVA antigen in the sample will prevent the E. canis DIVA antigen from binding to the immobilized antibody. Detection of any binding of the E. canis DIVA antigen to the immobilized antibody can be determined by adding a second binding partner for the E. canis antigen, either directly labeled or capable of becoming labeled through binding to another binding partner having a label. A positive sample, i.e. a sample having antibodies specific for an E. canis DIVA antigen, is associated with a decrease in signal from the label.

In one particular embodiment, antibodies to an E. canis DIVA antigen in a biological sample can be detected by contacting the sample with an E. canis DIVA antigen and adding the sample to microtiter plate coated with an anti-DIVA antigen monoclonal antibody. Binding of the DIVA antigen to the microtiter plate can be detected by adding a rabbit polyclonal antibody against the DIVA antigen and adding an HRP-conjugated donkey anti-rabbit polyclonal antibody. Antibodies in the sample will prevent the binding of the DIVA antigen to the immobilized antibody, thereby causing a decrease in signal.

Another method for detecting antibodies specific for an E. canis DIVA antigen is a sandwich assay where a biological sample suspected of containing an antibody specific for an E. canis DIVA antigen is contacted with an immobilized E. canis DIVA antigen to form an immunological complex. The presence of an antibody specific for an E. canis DIVA antigen is determined by the detection of the binding of a labeled binding partner for the E. canis antibody, such as a second antibody.

In one aspect of the invention, E. canis DIVA antigens can be immobilized on a suitable solid support. A biological sample is brought into contact with the E. canis DIVA antigen, to which the anti-E. canis antibodies bind, if such antibodies are present in the sample. The binding can be detected by any suitable means, e.g., enzymes, radionuclides, particulates or fluorescent labels. In a suitable embodiment, the detection reagent can be associated with a protein that is the same or similar to that which is used to capture anti-E. canis antibodies (if present). In one particular embodiment, antibodies to E. canis can be detected by immobilizing an E. canis antigen on a solid support. Biological samples can be contacted with the solid support and, following the removal of unbound sample, binding of the E. canis antibodies to the antigen can be accomplished with, for example, a labeled IgG antibody.

DIVA antigens of the invention can also comprise mimitopes of DIVA antigens of the invention. A mimitope is a random peptide epitope that mimics a natural antigenic epitope during epitope presentation. Random peptide epitopes can be identified by generating or selecting a library of random peptide epitopes. The library is contacted with an antibody. Mimitopes are identified that are specifically immunoreactive with the antibody. Random peptide libraries can, for example, be displayed on phage or generated as combinatorial libraries.

E. canis DIVA antigens, e.g., polypeptides, can be natural, i.e., isolated from a natural source, or can be synthetic (i.e., chemically synthesized or recombinantly produced using genetic engineering techniques). Natural proteins can be isolated from the whole bacterium by conventional techniques, such as affinity chromatography. Polyclonal or monoclonal antibodies can be used to prepare a suitable affinity column by well-known techniques.

Proteins that are immunologically cross-reactive with a natural E. canis protein can be chemically synthesized. For example, polypeptides having fewer than about 100 amino acids, more usually fewer than about 80 amino acids, and typically fewer than about 50 amino acids, can be synthesized by the well-known Merrifield solid-phase synthesis method where amino acids are sequentially added to a growing chain. Merrifield, 1963, J. Am. Chem. Soc., 85:2149-2156). Recombinant proteins can also be used. These proteins can be produced by expression in cultured cells of recombinant DNA molecules encoding a desired portion of the E. canis genome. The portion of the E. canis genome can itself be natural or synthetic, with natural genes obtainable from the isolated bacterium by conventional techniques.

E. canis Polynucleotides

Polynucleotides of the invention contain less than an entire microbial genome and can be single- or double-stranded nucleic acids. A polynucleotide can be RNA, DNA, cDNA, genomic DNA, chemically synthesized RNA or DNA or combinations thereof. The polynucleotides can be purified free of other components, such as proteins, lipids and other polynucleotides. For example, the polynucleotide can be 50%, 75%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% purified. A nucleic acid molecule existing among hundreds to millions of other nucleic acid molecules within, for example, cDNA or genomic libraries, or gel slices containing a genomic DNA restriction digest are not to be considered an isolated polynucleotide. The polynucleotides of the invention encode the polypeptides of the invention described above. In one embodiment of the invention the polynucleotides encode polypeptides shown in SEQ ID NOs:2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, fragments thereof, or combinations thereof. Polynucleotides of the invention can consist of less than about 200, 120, 100, 90, 75, 60, 57, 54, 45 (or any range between 200 and 45) contiguous, naturally occurring Ehrlichia canis polynucleotides. Polynucleotides of the invention can consist of greater than about 45, 54, 57, 60, 75, 90, 100, 120, 150, 200, (or any range between 45 and 200), or more contiguous, naturally occurring Ehrlichia canis polynucleotides. The purified polynucleotides can comprise additional heterologous nucleotides (that is, nucleotides that are not from Ehrlichia canis) and even additional Ehrlichia canis amino acids as long as they do not naturally occur contiguously with Ehrlichia canis p16 polynucleotides or other polynucleotides of the invention. Polynucleotides of the invention can comprise other nucleotide sequences, such as sequences coding for linkers, signal sequences, TMR stop transfer sequences, transmembrane domains, or ligands useful in protein purification such as glutathione-S-transferase, histidine tag, and Staphylococcal protein A.

Polynucleotides of the invention can be isolated. An isolated polynucleotide is a naturally-occurring polynucleotide that is not immediately contiguous with one or both of the 5′ and 3′ flanking genomic sequences that it is naturally associated with. An isolated polynucleotide can be, for example, a recombinant DNA molecule of any length, provided that the nucleic acid sequences naturally found immediately flanking the recombinant DNA molecule in a naturally-occurring genome is removed or absent. Isolated polynucleotides also include non-naturally occurring nucleic acid molecules. A nucleic acid molecule existing among hundreds to millions of other nucleic acid molecules within, for example, cDNA or genomic libraries, or gel slices containing a genomic DNA restriction digest are not to be considered an isolated polynucleotide. The complete nucleotide sequence for E. canis is available from, e.g., GenBank as accession number NCBI: NZ_AAEJ01000001.

Polynucleotides of the invention can also comprise fragments that encode immunogenic polypeptides. Polynucleotides of the invention can encode full-length polypeptides, polypeptide fragments, and variant or fusion polypeptides.

Degenerate nucleotide sequences encoding polypeptides of the invention, as well as homologous nucleotide sequences that are at least about 80, or about 90, 96, 98, or 99% identical to the polynucleotide sequences of the invention and the complements thereof are also polynucleotides of the invention. Percent sequence identity can be calculated as described in the “Polypeptides” section. Degenerate nucleotide sequences are polynucleotides that encode a polypeptide of the invention or fragments thereof, but differ in nucleic acid sequence from the wild-type polynucleotide sequence, due to the degeneracy of the genetic code. Complementary DNA (cDNA) molecules, species homologs, and variants of E. canis polynucleotides that encode biologically functional E. canis polypeptides also are E. canis polynucleotides. Polynucleotides of the invention can be isolated from nucleic acid sequences present in, for example, a biological sample, such as blood, serum, saliva, or tissue from an infected individual. Polynucleotides can also be synthesized in the laboratory, for example, using an automatic synthesizer. An amplification method such as PCR can be used to amplify polynucleotides from either genomic DNA or cDNA encoding the polypeptides.

Polynucleotides of the invention can comprise coding sequences for naturally occurring polypeptides or can encode altered sequences that do not occur in nature. If desired, polynucleotides can be cloned into an expression vector comprising expression control elements, including for example, origins of replication, promoters, enhancers, or other regulatory elements that drive expression of the polynucleotides of the invention in host cells. An expression vector can be, for example, a plasmid, such as pBR322, pUC, or ColE1, or an adenovirus vector, such as an adenovirus Type 2 vector or Type 5 vector. Optionally, other vectors can be used, including but not limited to Sindbis virus, simian virus 40, alphavirus vectors, poxvirus vectors, and cytomegalovirus and retroviral vectors, such as murine sarcoma virus, mouse mammary tumor virus, Moloney murine leukemia virus, and Rous sarcoma virus. Minichromosomes such as MC and MC1, bacteriophages, phagemids, yeast artificial chromosomes, bacterial artificial chromosomes, virus particles, virus-like particles, cosmids (plasmids into which phage lambda cos sites have been inserted) and replicons (genetic elements that are capable of replication under their own control in a cell) can also be used.

Methods for preparing polynucleotides operably linked to an expression control sequence and expressing them in a host cell are well-known in the art. See, e.g., U.S. Pat. No. 4,366,246. A polynucleotide of the invention is operably linked when it is positioned adjacent to or close to one or more expression control elements, which direct transcription and/or translation of the polynucleotide.

Polynucleotides of the invention can be used, for example, as probes or primers, for example PCR primers, to detect the presence of E. canis polynucleotides in a test sample, such as a biological sample. Probes are molecules capable of interacting with a target nucleic acid, typically in a sequence specific manner, for example, through hybridization. Primers are a subset of probes that can support an enzymatic manipulation and that can hybridize with a target nucleic acid such that the enzymatic manipulation occurs. A primer can be made from any combination of nucleotides or nucleotide derivatives or analogs available in the art that do not interfere with the enzymatic manipulation.

A probe or primer can be about 10, 15, 20, 25, 30, 40, 50, 60, 70, 80, 90, 100 or more contiguous nucleotides that encode polypeptides shown in, e.g., SEQ ID NOs:22-33.

The hybridization of nucleic acids is well understood in the art. Typically a probe can be made from any combination of nucleotides or nucleotide derivatives or analogs available in the art. The ability of such probes and primers to specifically hybridize to E. canis polynucleotide sequences will enable them to be of use in detecting the presence of complementary sequences in a given test sample. Polynucleotide probes and primers of the invention can hybridize to complementary sequences in a test sample such as a biological sample, including saliva, sputum, blood, plasma, serum, urine, feces, cerebrospinal fluid, amniotic fluid, wound exudate, or tissue. Polynucleotides from the sample can be, for example, subjected to gel electrophoresis or other size separation techniques or can be immobilized without size separation. The polynucleotide probes or primers can be labeled. Suitable labels, and methods for labeling probes and primers are known in the art, and include, for example, radioactive labels incorporated by nick translation or by kinase, biotin labels, fluorescent labels, chemiluminescent labels, bioluminescent labels, metal chelator labels and enzyme labels. The polynucleotides from the sample are contacted with the probes or primers under hybridization conditions of suitable stringencies.

Depending on the application, varying conditions of hybridization can be used to achieve varying degrees of selectivity of the probe or primer towards the target sequence. For applications requiring high selectivity, relatively stringent conditions can be used, such as low salt and/or high temperature conditions, such as provided by a salt concentration of from about 0.02 M to about 0.15 M salt at temperatures of from about 50° C. to about 70° C. For applications requiring less selectivity, less stringent hybridization conditions can be used. For example, salt conditions from about 0.14 M to about 0.9M salt, at temperatures ranging from about 20° C. to about 55° C. The presence of a hybridized complex comprising the probe or primer and a complementary polynucleotide from the test sample indicates the presence of E. canis or an E. canis polynucleotide in the sample.

Antibodies

Antibodies of the invention are antibody molecules that specifically bind to an E. canis polypeptide of the invention, variant polypeptides of the invention, or fragments thereof. An antibody of the invention can be specific for an Ehrlichia canis polypeptide, for example, an antibody specific for one or more of SEQ ID NOs:10, 22-33. An antibody of the invention can be a polyclonal antibody, a monoclonal antibody, a single chain antibody (scFv), or an antigen-binding fragment of an antibody. Antigen binding fragments of antibodies are the antigen-binding portion of an intact antibody comprising the antigen binding site or variable region of an intact antibody, wherein the portion is free of the constant heavy chain domains of the Fc region of the intact antibody. Examples of antigen binding fragments include Fab, Fab′, Fab′-SH, F(ab′)₂ and F_(v) fragments.

An antibody of the invention can be any antibody class, including for example, IgG, IgM, IgA, IgD and IgE. An antibody or fragment thereof binds to an epitope of a polypeptide of the invention. An antibody can be made in vivo in suitable laboratory animals or in vitro using recombinant DNA techniques. Means for preparing and characterizing antibodies are well know in the art. See, e.g., Dean, Methods Mol. Biol. 80:23-37 (1998); Dean, Methods Mol. Biol. 32:361-79 (1994); Baileg, Methods Mol. Biol. 32:381-88 (1994); Gullick, Methods Mol. Biol. 32:389-99 (1994); Drenckhahn et al. Methods Cell. Biol. 37:7-56 (1993); Morrison, Ann. Rev. Immunol. 10:239-65 (1992); Wright et al. Crit. Rev. Immunol. 12:125-68 (1992). For example, polyclonal antibodies can be produced by administering a polypeptide of the invention to an animal, such as a human or other primate, mouse, rat, rabbit, guinea pig, goat, pig, dog, cow, sheep, donkey, or horse. Serum from the immunized animal is collected and the antibodies are purified from the plasma by, for example, precipitation with ammonium sulfate, followed by chromatography, such as affinity chromatography. Techniques for producing and processing polyclonal antibodies are known in the art.

“Specifically binds” or “specific for” means that a first antigen, e.g., an E. canis polypeptide, recognizes and binds to an antibody of the invention with greater affinity than to other, non-specific molecules. “Specifically binds” or “specific for” also means a first antibody, e.g., an antibody raised against SEQ ID NOs:22-33, recognizes and binds to SEQ ID NOs:22-33, with greater affinity than to other non-specific molecules. A non-specific molecule is an antigen that shares no common epitope with the first antigen. In a preferred embodiment of the invention a non-specific molecule is not derived from Ehrlichia sp., and in particular is not derived from Ehrlichia chaffeensis or Ehrlichia canis. “Ehrlichia sp.” refers to all species of the genus Ehrlichia. For example, an antibody raised against a first antigen (e.g., a polypeptide) to which it binds more efficiently than to a non-specific antigen can be described as specifically binding to the first antigen. In one embodiment, an antibody or antigen-binding portion thereof of the invention specifically binds to a polypeptide of SEQ ID NOs:2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or fragments thereof when it binds with a binding affinity K_(a) of 10⁷ l/mol or more. Specific binding can be tested using, for example, an enzyme-linked immunosorbant assay (ELISA), a radioimmunoassay (RIA), or a western blot assay using methodology well known in the art.

Antibodies of the invention include antibodies and antigen binding fragments thereof that (a) compete with a reference antibody for binding to SEQ ID NOs:22-33 or antigen binding fragments thereof, (b) binds to the same epitope of SEQ ID NOs:22-33 or antigen binding fragments thereof as a reference antibody; (c) binds to SEQ ID NOs:22-33 or antigen binding fragments thereof with substantially the same K_(d) as a reference antibody; and/or (d) binds to SEQ ID NOs:22-33 or fragments thereof with substantially the same off rate as a reference antibody, wherein the reference antibody is an antibody or antigen-binding fragment thereof that specifically binds to a polypeptide of SEQ ID NOs:22-33 or antigen binding fragments thereof with a binding affinity K_(a) of 10⁷ l/mol or more.

Additionally, monoclonal antibodies directed against epitopes present on a polypeptide of the invention can also be readily produced. For example, normal B cells from a mammal, such as a mouse, which was immunized with a polypeptide of the invention can be fused with, for example, HAT-sensitive mouse myeloma cells to produce hybridomas. Hybridomas producing E. canis-specific antibodies can be identified using RIA or ELISA and isolated by cloning in semi-solid agar or by limiting dilution. Clones producing E. canis-specific antibodies are isolated by another round of screening. Monoclonal antibodies can be screened for specificity using standard techniques, for example, by binding a polypeptide of the invention to a microtiter plate and measuring binding of the monoclonal antibody by an ELISA assay. Techniques for producing and processing monoclonal antibodies are known in the art. See e.g., Kohler & Milstein, Nature, 256:495 (1975). Particular isotypes of a monoclonal antibody can be prepared directly, by selecting from the initial fusion, or prepared secondarily, from a parental hybridoma secreting a monoclonal antibody of a different isotype by using a sib selection technique to isolate class-switch variants. See Steplewski et al., P.N.A.S. U.S.A. 82:8653 1985; Spria et al., J. Immunolog. Meth. 74:307, 1984. Monoclonal antibodies of the invention can also be recombinant monoclonal antibodies. See, e.g., U.S. Pat. No. 4,474,893; U.S. Pat. No. 4,816,567. Antibodies of the invention can also be chemically constructed. See, e.g., U.S. Pat. No. 4,676,980.

Antibodies of the invention can be chimeric (see, e.g., U.S. Pat. No. 5,482,856), humanized (see, e.g., Jones et al., Nature 321:522 (1986); Reichmann et al., Nature 332:323 (1988); Presta, Curr. Op. Struct. Biol. 2:593 (1992)), or human antibodies. Human antibodies can be made by, for example, direct immortilization, phage display, transgenic mice, or a Trimera methodology, see e.g., Reisener et al., Trends Biotechnol. 16:242-246 (1998).

Antibodies that specifically bind E. canis antigens (e.g., E. canis polypeptides shown in SEQ ID NO:2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33), are particularly useful for detecting the presence of E. canis or E. canis antigens in a sample, such as a serum, blood, plasma, fecal, cell, tissue, urine or saliva sample from an E. canis-infected animal such as a human or dog. An immunoassay for E. canis or an E. canis antigen can utilize one antibody or several antibodies. An immunoassay for E. canis or an E. canis antigen can use, for example, a monoclonal antibody specific for an E. canis epitope, a combination of monoclonal antibodies specific for epitopes of one E. canis polypeptide, monoclonal antibodies specific for epitopes of different E. canis polypeptides, polyclonal antibodies specific for the same E. canis antigen, polyclonal antibodies specific for different E. canis antigens, or a combination of monoclonal and polyclonal antibodies. Immunoassay protocols can be based upon, for example, competition, direct reaction, or sandwich type assays using, for example, labeled antibody. Antibodies of the invention can be labeled with any type of label known in the art, including, for example, fluorescent, chemiluminescent, radioactive, enzyme, colloidal metal, radioisotope and bioluminescent labels.

Antibodies of the invention or antigen-binding fragments thereof can be bound to a support and used to detect the presence of E. canis or an E. canis antigen, e.g., an E. canis DIVA antigen or E. canis vaccine antigen. Supports include, for example, glass, polystyrene, polypropylene, polyethylene, dextran, nylon, amylases, natural and modified celluloses, polyacrylamides, agaroses and magletite.

Antibodies of the invention can further be used to isolate E. canis organisms or E. canis antigens by immunoaffinity columns. The antibodies can be affixed to a solid support by, for example, adsorption or by covalent linkage so that the antibodies retain their immunoselective activity. Optionally, spacer groups can be included so that the antigen binding site of the antibody remains accessible. The immobilized antibodies can then be used to bind E. canis organisms or E. canis antigens from a sample, such as a biological sample including saliva, serum, sputum, blood, urine, feces, cerebrospinal fluid, amniotic fluid, wound exudate, or tissue. The bound E. canis organisms or E. canis antigens are recovered from the column matrix by, for example, a change in pH.

Antibodies of the invention can also be used in immunolocalization studies to analyze the presence and distribution of a polypeptide of the invention during various cellular events or physiological conditions. Antibodies can also be used to identify molecules involved in passive immunization and to identify molecules involved in the biosynthesis of non-protein antigens. Identification of such molecules can be useful in vaccine development. Antibodies of the invention, including, for example, monoclonal antibodies and single chain antibodies, can be used to monitor the course of amelioration of a disease caused by E. canis. By measuring the increase or decrease of E. canis antibodies specific for E. canis antigens in a test sample from an animal, it can be determined whether a particular therapeutic regiment aimed at ameliorating the disorder is effective. Antibodies can be detected and/or quantified using for example, direct binding assays such as RIA, ELISA, or western blot assays.

Detection

The methods of the invention can be used to detect antibodies or antigen-binding antibody fragments specific for Ehrlichia canis antigens or Ehrlichia canis polynucleotides in a test sample, such as a biological sample, an environmental sample, or a laboratory sample. A test sample can potentially comprise Ehrlichia sp. polynucleotides, Ehrlichia canis polynucleotides, Ehrlichia sp. polypeptides, Ehrlichia canis polypeptides, antibodies specific for Ehrlichia sp., and/or antibodies specific for Ehrlichia canis, unrelated polynucleotide and polypeptides, combinations thereof, or none of the above. A biological sample can include, for example, sera, blood, cells, plasma, saliva, urine, feces, or tissue from a mammal such as a horse, cat, dog or human. The test sample can be untreated, precipitated, fractionated, separated, diluted, concentrated, or purified.

In one embodiment methods of the invention comprise contacting one or more polypeptides of the invention with a test sample under conditions that allow polypeptide/antibody complexes, i.e., immunocomplexes, to form. That is, polypeptides of the invention specifically bind to antibodies specific for Ehrlichia canis antigens located in the sample. In one embodiment of the invention one or more polypeptides of the invention specifically bind to antibodies that are specific for Ehrlichia canis antigens and do not specifically bind to antigens from other pathogens, such as, e.g., Ehrlichia chaffeensis antigens. One of skill in the art is familiar with assays and conditions that are used to detect antibody/polypeptide complex binding. The formation of a complex between polypeptides and antibodies in the sample is detected. The formation of antibody/polypeptide complexes is an indication that Ehrlichia canis polypeptides are present in the sample. The lack of detection of the polypeptide/antibody complexes is an indication that Ehrlichia canis polypeptides are not present in the sample.

Antibodies of the invention can be used in a method of detection of Ehrlichia canis antigens by obtaining a test sample from, e.g., a human or animal suspected of having an Ehrlichia canis infection. The test sample is contacted with antibodies of the invention under conditions enabling the formation of antibody-antigen complexes (i.e., immunocomplexes). One of skill in the art is aware of conditions that enable and are appropriate for formation of antigen/antibody complexes. The amount of antibody-antigen complexes can be determined by methodology known in the art. A level that is higher than that formed in a negative control sample indicates presence of Ehrlichia canis antigens. A negative control sample is a sample that does not comprise any Ehrlichia canis polypeptides. In one embodiment of the invention the negative control contains no Ehrlichia sp. polypeptides. In one embodiment of the invention an antibody is specific for Ehrlichia canis antigens and is not specific for antigens from other pathogens, such as, e.g., Ehrlichia chaffeensis antigens. Alternatively, a polypeptide of the invention can be contacted with a test sample. Antibodies specific for Ehrlichia canis in a positive test sample will form antigen-antibody complexes under suitable conditions. The amount of antibody-antigen complexes can be determined by methods known in the art.

In one embodiment of the invention, Ehrlichia canis infection can be detected in a subject. A biological sample is obtained from the subject. One or more purified polypeptides comprising SEQ ID NOs:22-33 or other polypeptides of the invention are contacted with the biological sample under conditions that allow polypeptide/antibody complexes to form. The polypeptide/antibody complexes are detected. The detection of the polypeptide/antibody complexes is an indication that antibodies specific for Ehrlichia canis are present. The lack of detection of the polypeptide/antibody complexes is an indication that the mammal does not have antibodies specific for Ehrlichia canis.

In one embodiment of the invention the Ehrlichia canis antibodies detected by an immunoassay of the invention are IgG, IgM, IgA, IgD or IgE. In another embodiment of the invention, the antibodies used to detect Ehrlichia canis antigens are IgG, IgM, IgA, IgD or IgE.

In one embodiment of the invention, Ehrlichia canis infection can be detected in a subject by about 5 days, 6 days, 7 days, 8 days, 9 days, 10 days, 11 days, 12 days, 13 days, 14 days, 15 days, 16 days, 17 days, 18 days, 19 days, 20 days, 21 days or more after the subject acquired the Ehrlichia canis infection. In one embodiment of the invention, Ehrlichia canis infection can be detected in a subject by about 21 days, 20 days, 19 days, 18 days, 17 days, 16 days, 15 days, 14 days, 13 days, 12 days, 11 days, 10 days, 9 days, 8 days, 7 days, 6 days, 5 days, or less after the subject acquired the Ehrlichia canis infection.

In one embodiment of the invention, the polypeptide/antibody complex is detected when an indicator reagent, such as an enzyme conjugate, which is bound to the antibody, catalyzes a detectable reaction. Optionally, an indicator reagent comprising a signal generating compound can be applied to the polypeptide/antibody complex under conditions that allow formation of a polypeptide/antibody/indicator complex. The polypeptide/antibody/indicator complex is detected. Optionally, the polypeptide or antibody can be labeled with an indicator reagent prior to the formation of a polypeptide/antibody complex. The method can optionally comprise a positive or negative control.

In one embodiment of the invention, one or more antibodies of the invention are attached to a solid phase or substrate. A test sample potentially comprising a protein comprising a polypeptide of the invention is added to the substrate. One or more antibodies that specifically bind polypeptides of the invention are added. The antibodies can be the same antibodies used on the solid phase or can be from a different source or species and can be linked to an indicator reagent, such as an enzyme conjugate. Wash steps can be performed prior to each addition. A chromophore or enzyme substrate is added and color is allowed to develop. The color reaction is stopped and the color can be quantified using, for example, a spectrophotometer.

In another embodiment of the invention, one or more antibodies of the invention are attached to a solid phase or substrate. A test sample potentially comprising a protein comprising a polypeptide of the invention is added to the substrate. Second anti-species antibodies that specifically bind polypeptides of the invention are added. These second antibodies are from a different species than the solid phase antibodies. Third anti-species antibodies are added that specifically bind the second antibodies and that do not specifically bind the solid phase antibodies are added. The third antibodies can comprise an indicator reagent such as an enzyme conjugate. Wash steps can be performed prior to each addition. A chromophore or enzyme substrate is added and color is allowed to develop. The color reaction is stopped and the color can be quantified using, for example, a spectrophotometer.

Assays of the invention include, but are not limited to those based on competition, direct reaction or sandwich-type assays, including, but not limited to enzyme linked immunosorbent assay (ELISA), western blot, IFA, radioimmunoassay (RIA), hemagglutination (HA), fluorescence polarization immunoassay (FPIA), and microtiter plate assays (any assay done in one or more wells of a microtiter plate). One assay of the invention comprises a reversible flow chromatographic binding assay, for example a SNAP® assay (reversible flow chromatographic assay). See e.g., U.S. Pat. No. 5,726,010.

Assays can use solid phases or substrates or can be performed by immunoprecipitation or any other methods that do not utilize solid phases. Where a solid phase or substrate is used, one or more polypeptides of the invention are directly or indirectly attached to a solid support or a substrate such as a microtiter well, magnetic bead, non-magnetic bead, column, matrix, membrane, fibrous mat composed of synthetic or natural fibers (e.g., glass or cellulose-based materials or thermoplastic polymers, such as, polyethylene, polypropylene, or polyester), sintered structure composed of particulate materials (e.g., glass or various thermoplastic polymers), or cast membrane film composed of nitrocellulose, nylon, polysulfone or the like (generally synthetic in nature). In one embodiment of the invention a substrate is sintered, fine particles of polyethylene, commonly known as porous polyethylene, for example, 10-15 micron porous polyethylene from Chromex Corporation (Albuquerque, N. Mex.). All of these substrate materials can be used in suitable shapes, such as films, sheets, or plates, or they may be coated onto or bonded or laminated to appropriate inert carriers, such as paper, glass, plastic films, or fabrics. Suitable methods for immobilizing peptides on solid phases include ionic, hydrophobic, covalent interactions and the like. Immobilization of one or more analyte capture reagents, e.g., E. canis polypeptides, onto a device or solid support is performed so that an analyte capture reagent will not be washed away by the sample, diluent and/or wash procedures. One or more analyte capture reagents can be attached to a surface by physical adsorption (i.e., without the use of chemical linkers) or by chemical binding (i.e., with the use of chemical linkers). Chemical binding can generate stronger attachment of capture reagents on a surface and provide defined orientation and conformation of the surface-bound molecules.

In one type of assay format, one or more polypeptides can be coated on a solid phase or substrate. A test sample suspected of containing anti-Ehrlichia canis antibodies or antigen-binding fragments thereof is incubated with an indicator reagent comprising a signal generating compound conjugated to an antibodies or antibody fragments specific for Ehrlichia canis for a time and under conditions sufficient to form antigen/antibody complexes of either antibodies of the test sample to the polypeptides of the solid phase or the indicator reagent compound conjugated to an antibody specific for Ehrlichia canis to the polypeptides of the solid phase. The reduction in binding of the indicator reagent conjugated to anti-Ehrlichia canis antibodies to the solid phase can be quantitatively measured. A measurable reduction in the signal compared to the signal generated from, e.g., a confirmed negative Ehrlichia canis test sample indicates the presence of anti-Ehrlichia canis antibodies in the test sample. This type of assay can quantitate the amount of anti-Ehrlichia canis antibodies in a test sample.

In another type of assay format, one or more polypeptides of the invention are coated onto a support or substrate. A polypeptide of the invention is conjugated to an indicator reagent and added to a test sample. This mixture is applied to the support or substrate. If antibodies specific for Ehrlichia canis are present in the test sample they will bind the one or more polypeptides conjugated to an indicator reagent and to the one or more polypeptides immobilized on the support. The polypeptide/antibody/indicator complex can then be detected. This type of assay can quantitate the amount of anti-Ehrlichia canis antibodies in a test sample.

In another type of assay format, one or more polypeptides of the invention are coated onto a support or substrate. The test sample is applied to the support or substrate and incubated. Unbound components from the sample are washed away by washing the solid support with a wash solution. If Ehrlichia canis specific antibodies are present in the test sample, they will bind to the polypeptide coated on the solid phase. This polypeptide/antibody complex can be detected using a second species-specific antibody that is conjugated to an indicator reagent. The polypeptide/antibody/anti-species antibody indicator complex can then be detected. This type of assay can quantitate the amount of anti-Ehrlichia canis antibodies in a test sample.

Another embodiment of the invention provides a device that is suitable for a lateral flow assay. For example, a test sample is added to a flow matrix at a first region (a sample application zone). The test sample is carried in a fluid flow path by capillary action to a second region of the flow matrix where a label capable of binding and forming a first complex with an analyte in the test sample. The first complex is carried to a third region of the flow matrix where an E. canis polypeptide is immobilized at a distinct location. A second complex is formed between an immobilized polypeptide and the first complex including the antibody from the sample. For example, a first complex comprising a gold sol particle and an E. canis polypeptide bound to an E. canis antibody will specifically bind and form a second complex with a second immobilized E. canis polypeptide or with a second antibody directed to E. canis antibodies. The label that is part of the second complex can be directly visualized.

In another aspect, the invention includes one or more labeled specific binding reagents that can be mixed with a test sample prior to application to a device of the invention. In this case it is not necessary to have labeled specific binding reagents deposited and dried on a specific binding reagent pad in the device. A labeled specific binding reagent, whether added to a test sample or pre-deposited on the device, can be for example, a labeled antibody that specifically binds an antibody for E. canis.

An E. canis DIVA antigen or an E. canis vaccine antigen, e.g., a polypeptide, can be an immobilized analyte capture reagent in a reaction zone (solid phase). A second analyte capture reagent, e.g. an anti-IgG or anti-IgM antibody, that has been conjugated to a label, can either be added to the sample before the sample is added to the device, or the second analyte capture reagent can be incorporated into the device. For example the labeled specific binding reagent can be deposited and dried on a fluid flow path that provides fluid communication between the sample application zone and the solid phase. Contact of the labeled specific binding reagent with the fluid sample results in dissolution of the labeled specific binding reagent.

The device can also include a liquid reagent that transports unbound material (e.g., unreacted fluid sample and unbound specific binding reagents) away from the reaction zone (solid phase). A liquid reagent can be a wash reagent and serve only to remove unbound material from the reaction zone, or it can include a detector reagent and serve to both remove unbound material and facilitate analyte detection. For example, in the case of a specific binding reagent conjugated to an enzyme, the detector reagent includes a substrate that produces a detectable signal upon reaction with the enzyme-antibody conjugate at the reactive zone. In the case of a labeled specific binding reagent conjugated to a radioactive, fluorescent, or light-absorbing molecule, the detector reagent acts merely as a wash solution facilitating detection of complex formation at the reactive zone by washing away unbound labeled reagent.

Two or more liquid reagents can be present in a device, for example, a device can comprise a liquid reagent that acts as a wash reagent and a liquid reagent that acts as a detector reagent and facilitates analyte detection.

A liquid reagent can further include a limited quantity of an “inhibitor”, i.e., a substance that blocks the development of the detectable end product. A limited quantity is an amount of inhibitor sufficient to block end product development until most or all excess, unbound material is transported away from the second region, at which time detectable end product is produced.

The formation of a polypeptide/antibody complex or a polypeptide/antibody/indicator complex can be detected by, for example, radiometric, calorimetric, fluorometric, size-separation, or precipitation methods. Optionally, detection of a polypeptide/antibody complex is by the addition of a secondary antibody that is coupled to an indicator reagent comprising a signal generating compound. Indicator reagents comprising signal generating compounds (labels) associated with a polypeptide/antibody complex can be detected using the methods described above and include chromogenic agents, catalysts such as enzyme conjugates fluorescent compounds such as fluorescein and rhodamine, chemiluminescent compounds such as dioxetanes, acridiniums, phenanthridiniums, ruthenium, and luminol, radioactive elements, direct visual labels, as well as cofactors, inhibitors, magnetic particles, and the like. Examples of enzyme conjugates include alkaline phosphatase, horseradish peroxidase, beta-galactosidase, and the like. The selection of a particular label is not critical, but it will be capable of producing a signal either by itself or in conjunction with one or more additional substances.

Formation of the complex is indicative of the presence of anti-Ehrlichia canis antibodies in a test sample. Therefore, the methods of the invention can be used to diagnose Ehrlichia canis infection in an animal.

The methods of the invention can also indicate the amount or quantity of anti-Ehrlichia canis antibodies in a test sample. With many indicator reagents, such as enzyme conjugates, the amount of antibody present is proportional to the signal generated. Depending upon the type of test sample, it can be diluted with a suitable buffer reagent, concentrated, or contacted with a solid phase without any manipulation. For example, it usually is preferred to test serum or plasma samples that previously have been diluted, or concentrated specimens such as urine, in order to determine the presence and/or amount of antibody present.

The invention further comprises assay kits (e.g., articles of manufacture) for detecting anti-Ehrlichia canis antibodies or antigen-binding antibody fragments, or Ehrlichia canis polypeptides in a sample. A kit comprises one or more polypeptides of the invention and means for determining binding of the polypeptide to anti-Ehrlichia canis antibodies or antibody fragments in the sample. A kit or article of manufacture can also comprise one or more antibodies or antibody fragments of the invention and means for determining binding of the antibodies or antibody fragments to Ehrlichia canis polypeptides in the sample. A kit can comprise a device containing one or more polypeptides or antibodies of the invention and instructions for use of the one or more polypeptides or antibodies for, e.g., the identification of an Ehrlichia canis infection in a mammal. The kit can also comprise packaging material comprising a label that indicates that the one or more polypeptides or antibodies of the kit can be used for the identification of Ehrlichia canis infection. Other components such as buffers, stabilizers, positive controls, negative controls, detector reagents, and the like, known to those of ordinary skill in art, can be included in such test kits. The polypeptides, antibodies, assays, and kits of the invention are useful, for example, in the diagnosis of individual cases of Ehrlichia canis infection in a patient, as well as epidemiological studies of Ehrlichia canis outbreaks. The relative amounts of the various reagents can be varied, to provide for concentrations in solution of the reagents that substantially optimize the sensitivity of the assay. Particularly, the reagents can be provided as dry powders, usually lyophilized, which on dissolution will provide for a reagent solution having the appropriate concentrations for combining with a sample.

Polypeptides and assays of the invention can be combined with other polypeptides or assays to detect the presence of Ehrlichia canis along with other organisms. For example, polypeptides and assays of the invention can be combined with reagents that detect heartworm and/or Borrelia burgdorferi and/or Ehrlichia chaffeensis and/or Anaplasma platys and/or Anaplasma phagocytophilum.

Polynucleotides of the invention can be used to detect the presence of Ehrlichia canis polynucleotides in a sample. The polynucleotides can be used to detect Ehrlichia canis polynucleotides in a sample by a simple hybridization reaction and can also be used in, e.g., polymerase chain reactions (PCR) such as a real-time PCR reaction. Methods and compositions of the invention can also be used to differentially detect the presence Ehrlichia canis from other Ehrlichia sp., such as Ehrlichia chaffeensis.

PCR assays are well described in the art, including, for example, U.S. Pat. Nos. 4,683,195; U.S. Pat. No. 4,683,202;U.S. Pat. No. 4,965,188. Generally, polynucleotide primers are annealed to denatured strands of a target nucleic acid. Primer extension products are formed by polymerization of deoxynucleoside triphosphates by a polymerase. PCR then involves repetitive cycles of template nucleic acid denaturation, primer annealing and extension of the annealed primers by the action of a thermostable polymerase. The process results in exponential amplification of the target Ehrlichia canis nucleic acids in the test sample, which allows for the detection of target polynucleotides existing in very low concentrations in a sample.

Real-time PCR assays are based on the detection of a signal, e.g., a fluorescent reporter signal. This signal increases in direct proportion to the amount of PCR product in a reaction. Real-time PCR is any amplification technique that makes it possible to monitor the evolution of an ongoing amplification reaction. See, Quantitation of DNA/RNA Using Real-Time PCR Detection, Perkin Elmer Applied Biosystems (1999); PCR Protocols (Academic Press New York, 1989). By recording the amount of fluorescence emission at each cycle, it is possible to monitor the PCR reaction during exponential phase where the first significant increase in the amount of PCR product correlates to the initial amount of target template. The higher the starting copy number of the nucleic acid target, the sooner a significant increase in fluorescence is observed.

One embodiment of the invention provides a method for detecting and/or quantifying Ehrlichia canis polynucleotides in a test sample. Sense primers and antisense primers can be added to a test sample under conditions suitable for a polymerase chain reaction. The primers hybridize with Ehrlichia canis polynucleotides such that an amplification product is formed if Ehrlichia canis polynucleotides are present in the test sample. Amplification products are detected and the presence and/or quantity of Ehrlichia canis polynucleotides are determined. Amplification products can be detected with a polynucleotide probe that hybridizes, under conditions suitable for a polymerase chain reaction, with an Ehrlichia canis polynucleotide sequence. The amplification product can be quantified by measuring a detection signal from the probe and comparing said detection signal to a second probe detection signal from a quantification standard. The quantification standard can be extracted in parallel with the test sample.

Methods of Treatment, Amelioration, or Prevention of a Disease Caused by E. canis

In one embodiment of the invention, a DIVA polypeptide, polynucleotide or antibody of the invention could be used to treat, ameliorate, or prevent a disease caused by E. canis. If, however, a DIVA polypeptide is used to treat, ameliorate, or prevent a disease caused by E. canis, it could not, thereafter, be used as a DIVA polypeptide for the detection and differentiation of infected, non-vaccinated, and vaccinated animals because a vaccinated animal's immune system could recognize the DIVA antigen used for vaccination. However, a DIVA polypeptide that does not cross-react with antibodies to the DIVA polypeptide used for treatment, amelioration or prevention of a disease caused by E. canis may still be used as an E. canis DIVA antigen.

For example, if SEQ ID NO:2 or a fragment thereof is used as a vaccine, then SEQ ID NOs:4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or combinations thereof can be used as a DIVA polypeptide, if they do not cross-react with antibodies specific for SEQ ID NO:2. Presently, none of SEQ ID NOs:10, 22-33 are used in a commercial subunit E. canis vaccine and SEQ ID NOs:10, 22-33 do not detect E. canis-specific antibodies in animals vaccinated with whole inactivated E. canis cells. Therefore, DIVA polypeptide selection is not presently an issue. However, those of skill in the art are aware of the composition of E. canis vaccines. If a commercial E. canis subunit vaccine were to comprise SEQ ID NOs: 10, 22-33, then one of skill in the art would avoid use of SEQ ID NOs:10, 22-33 (if necessary due to the generation of E. canis antibodies specific for SEQ ID NOs:10, 22-33) to differentiate vaccination status and would instead use other E. canis DIVA antigens.

Therefore, the DIVA polypeptides, polynucleotides, and antibodies could be used in two different ways: (1) as compositions for the prevention, treatment, or amelioration of a disease or infection caused by E. canis; and (2) as an E. canis DIVA antigen for the detection and differentiation of animals that are vaccinated; non-vaccinated; infected or not infected with E. canis.

Polypeptides, polynucleotides, and antibodies of the invention can be used to treat, ameliorate, or prevent a disease caused by E. canis. For example, an antibody, such as a monoclonal antibody of the invention or fragments thereof, can be administered to an animal, such as a human. In one embodiment of the invention an antibody or fragment thereof is administered to an animal in a pharmaceutical composition comprising a pharmaceutically acceptable carrier. A pharmaceutical composition comprises a therapeutically effective amount of an antibody or fragments thereof. A therapeutically effective amount is an amount effective in alleviating the symptoms of E. canis infection or in reducing the amount of E. canis organisms in a subject.

Polypeptides or polynucleotides of the invention can be present in an immunogenic composition and used to elicit an immune response in a host. An immunogenic composition is capable of inducing an immune response in an animal. An immunogenic polypeptide or polynucleotide composition of the invention is particularly useful in sensitizing an immune system of an animal such that, as one result, an immune response is produced that ameliorates or prevents the effect of E. canis infection. The elicitation of an immune response in animal model can be useful to determine, for example, optimal doses or administration routes. Elicitation of an immune response can also be used to treat, prevent, or ameliorate a disease or infection caused by E. canis. An immune response includes humoral immune responses or cell mediated immune responses, or a combination thereof. An immune response can also comprise the promotion of a generalized host response, e.g., by promoting the production of defensins.

The generation of an antibody titer by an animal against E. canis can be important in protection from infection and clearance of infection. Detection and/or quantification of antibody titers after delivery of a polypeptide or polynucleotide can be used to identify epitopes that are particularly effective at eliciting antibody titers. Epitopes responsible for a strong antibody response to E. canis can be identified by eliciting antibodies directed against E. canis polypeptides of different lengths. Antibodies elicited by a particular polypeptide epitope can then be tested using, for example, an ELISA assay to determine which polypeptides contain epitopes that are most effective at generating a strong response. Polypeptides or fusion proteins that contain these epitopes or polynucleotides encoding the epitopes can then be constructed and used to elicit a strong antibody response.

A polypeptide, polynucleotide, or antibody of the invention can be administered to a mammal, such as a mouse, rabbit, guinea pig, macaque, baboon, chimpanzee, human, cow, sheep, pig, horse, dog, cat, or to animals such as chickens or ducks, to elicit antibodies in vivo. Injection of a polynucleotide has the practical advantages of simplicity of construction and modification. Further, injection of a polynucleotide results in the synthesis of a polypeptide in the host. Thus, the polypeptide is presented to the host immune system with native post-translational modifications, structure, and conformation. A polynucleotide can be delivered to a subject as “naked DNA.”

Administration of a polynucleotide, polypeptide, or antibody can be by any means known in the art, including intramuscular, intravenous, intrapulmonary, intramuscular, intradermal, intraperitoneal, or subcutaneous injection, aerosol, intranasal, infusion pump, suppository, mucosal, topical, and oral, including injection using a biological ballistic gun (“gene gun”). A polynucleotide, polypeptide, or antibody can be accompanied by a protein carrier for oral administration. A combination of administration methods can also be used to elicit an immune response. Antibodies can be administered at a daily dose of about 0.5 mg to about 200 mg. In one embodiment of the invention antibodies are administered at a daily dose of about 20 to about 100 mg.

Pharmaceutically acceptable carriers and diluents for therapeutic use are well known in the art and are described in, for example, Remington's Pharmaceutical Sciences, Mack Publishing Co. (A. R. Gennaro ed. (1985)). The carrier should not itself induce the production of antibodies harmful to the host. Such carriers include, but are not limited to, large, slowly metabolized, macromolecules, such as proteins, polysaccharides such as latex functionalized SEPHAROSE®, agarose, cellulose, cellulose beads and the like, polylactic acids, polyglycolic acids, polymeric amino acids such as polyglutamic acid, polylysine, and the like, amino acid copolymers, peptoids, lipitoids, and inactive, avirulent virus particles or bacterial cells. Liposomes, hydrogels, cyclodextrins, biodegradable nanocapsules, and bioadhesives can also be used as a carrier for a composition of the invention.

Pharmaceutically acceptable salts can also be used in compositions of the invention, for example, mineral salts such as hydrochlorides, hydrobromides, phosphates, or sulfates, as well as salts of organic acids such as acetates, proprionates, malonates, or benzoates. Especially useful protein substrates are serum albumins, keyhole limpet hemocyanin, immunoglobulin molecules, thyroglobulin, ovalbumin, tetanus toxoid, and other proteins well known to those of skill in the art. Compositions of the invention can also contain liquids or excipients, such as water, saline, phosphate buffered saline, Ringer's solution, Hank's solution, glucose, glycerol, dextrose, malodextrin, ethanol, or the like, singly or in combination, as well as substances such as wetting agents, emulsifying agents, tonicity adjusting agents, detergent, or pH buffering agents. Additional active agents, such as bacteriocidal agents can also be used.

If desired, co-stimulatory molecules, which improve immunogen presentation to lymphocytes, such as B7-1 or B7-2, or cytokines such as MIP1α, GM-CSF, IL-2, and IL-12, can be included in a composition of the invention. Optionally, adjuvants can also be included in a composition. Adjuvants are substances that can be used to nonspecifically augment a specific immune response. Generally, an adjuvant and a polypeptide of the invention are mixed prior to presentation to the immune system, or presented separately, but are presented into the same site of the animal. Adjuvants can include, for example, oil adjuvants (e.g. Freund's complete and incomplete adjuvants) mineral salts (e.g. Alk(SO₄)₂; AlNa(SO₄)₂, AlNH₄(SO₄), Silica, Alum, Al(OH)₃, and Ca₃(PO₄)₂), polynucleotides (i.e. Polyic and Poly AU acids), and certain natural substances (e.g. wax D from Mycobacterium tuberculosis, as well as substances found in Corynebacterium parvum, Bordetella pertussis and members of the genus Brucella. Adjuvants which can be used include, but are not limited to MF59-0, aluminum hydroxide, N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP), N-acetyl-nor-muramyl-L-alanyl-D-isoglutamine (CGP 11637), referred to as nor-MDP), N-acetylmuramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1′-2′-dipalmitoyl-sn-glycero-3-hydroxyphosphoryloxy)-ethylamine (CGP 19835A, referred to as MTP-PE), and RIBI, which contains three components extracted from bacteria, monophosphoryl lipid A, trehalose dimycolate and cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/TWEEN® 80 emulsion.

The compositions of the invention can be formulated into ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, injectable formulations, mouthwashes, dentrifices, and the like. The percentage of one or more polypeptides, polynucleotides, or antibodies of the invention in such compositions and preparations can vary from 0.1% to 60% of the weight of the unit.

Administration of polypeptides, polynucleotides, or antibodies can elicit an immune response in the animal that lasts for at least 1 week, 1 month, 3 months, 6 months, 1 year, or longer. Optionally, an immune response can be maintained in an animal by providing one or more booster injections of the polypeptide, polynucleotide, or antibodies at 1 month, 3 months, 6 months, 1 year, or more after the primary injection. If desired, co-stimulatory molecules or adjuvants can also be provided before, after, or together with the compositions.

A composition of the invention comprising a polypeptide, polynucleotide, antibody, or a combination thereof is administered in a manner compatible with the particular composition used and in an amount that is effective to elicit an immune response as detected by, for example, an ELISA. A polynucleotide can be injected intramuscularly to a mammal, such as a baboon, chimpanzee, dog, or human, at a dose of 1 ng/kg, 10 ng/kg, 100 ng/kg, 1000 ng/kg, 0.001 mg/kg, 0.1 mg/kg, or 0.5 mg/kg. A polypeptide or antibody can be injected intramuscularly to a mammal at a dose of 0.01, 0.05, 0.5, 0.75, 1.0, 1.5, 2.0, 2.5, 5 or 10 mg/kg.

Polypeptides, polynucleotides, or antibodies, or a combination thereof can be administered either to an animal that is not infected with E. canis or can be administered to an E. canis-infected animal. The particular dosages of polynucleotide, polypeptides, or antibodies in a composition will depend on many factors including, but not limited to the species, age, gender, concurrent medication, general condition of the mammal to which the composition is administered, and the mode of administration of the composition. An effective amount of the composition of the invention can be readily determined using only routine experimentation.

A method of monitoring an E. canis infection in a patient is also provided. The method includes determining the level of anti-E. canis antibodies in a sample of a biological fluid from a patient suffering from or at risk of an E. canis infection at a first time point using polypeptides of the invention. The level of anti-E. canis antibodies is determined in one or more samples of the biological fluid from the patient at one or more different time points. The levels of anti-E. canis antibodies are determined at different time points such that the E. canis infection is monitored. The level or amount of anti-E. canis antibodies provide an indication of the success of treatment or therapy, or of progression of the infection.

All patents, patent applications, and other scientific or technical writings referred to anywhere herein are incorporated by reference in their entirety. The invention illustratively described herein suitably can be practiced in the absence of any element or elements, limitation or limitations that are not specifically disclosed herein. Thus, for example, in each instance herein any of the terms “comprising”, “consisting essentially of”, and “consisting of” can be replaced with either of the other two terms, while retaining their ordinary meanings. The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention that in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention claimed. Thus, it should be understood that although the present invention has been specifically disclosed by embodiments, optional features, modification and variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scope of this invention as defined by the description and the appended claims.

In addition, where features or aspects of the invention are described in terms of Markush groups or other grouping of alternatives, those skilled in the art will recognize that the invention is also thereby described in terms of any individual member or subgroup of members of the Markush group or other group.

EXAMPLES Example 1 Preparation of Formalin Inactivated E. Canis for Immunization into Dogs

E. canis was grown in canine cell culture using methods described in the literature. See e.g., Breitschwerdt, Antimicrobial Agents and Chemotherapy, 1998, Vol 42:362-368. Using light microscopy, 030 cells were estimated to be greater than 80% infected by E. canis. Two liters of E. canis infected cell culture were collected, centrifuged and the pellet retained yielding 7.31 gms of material (wet weight). It is presumed water made up 80% of the weight of the material, giving an estimated dry weight of 1.462 gms (20% of the weight of the material). The cell pellet was resuspended to 20 mg/ml in PBS (dry weight) for a total volume of 73 ml.

To this resuspended cell pellet, 0.73 ml of formalin solution was added (Sigma Catalog HT50-1-2 Formalin Solution 10%, neutral buffered) for a final formaldehyde concentration of 0.04%. The solution was stirred overnight at 4° C. The inactivated mixture was centrifuged and the cell pellet retained. The pellet was washed by resuspension into 250 mls of PBS. The material was collected by centrifugation and the wash was repeated one time.

The washed cell pellet was resuspended into 73 mls of PBS. The sample was aliquoted to 73 screw cap vials and frozen at −80° C. Each vial contains 20 mgs (dry weight) of formalin inactivated E. canis cell culture, suitable for combining with the appropriate adjuvant for immunization into animals.

Example 2 Preparation of Formalin Inactivated E. canis with Two Different Adjuvants, Protocol for the Immunization of Beagles with E. canis Antigen, and Testing of Sera from Immunized Beagles Using SNAP® 3Dx® (Reversible Flow Chromatographic Assay)

The preparation of antigen with aluminum hydroxide adjuvant is a technique well known to those skilled in the art. For example see “Antibodies, A Laboratory Manual”, Cold Spring Harbor Press, 1988, pp 99.

For immunization into dogs (laboratory beagles), two sets of doses were prepared with aluminum hydroxide adjuvant prepared as described above and two sets of doses were prepared with Ribi adjuvant (Corixa Corp., Seattle Wash.) using the protocol described by the manufacturer. Each dose contained approximately 20 mg of formalin inactivated E. canis cell culture (dry weight).

Kennel kept laboratory beagles were selected for immunization with the E. canis formalin inactivated antigen. Two groups of two dogs each; with each group using a different adjuvant were dosed with the formalin inactivated E. canis preparation (aluminum oxide or Ribi). On day 0 all 4 dogs were found to be sero-negative using both the SNAP® 3Dx® (reversible flow chromatographic assay) diagnostic as well as western blot analysis using E. canis organism.

The IACUC committee of Covance Research Products Inc. approved the protocol for immunization of laboratory beagles. Dogs were vaccinated on days 0, 28 and 56 with weekly 1 ml bleeds being monitored using SNAP® 3Dx® (reversible flow chromatographic assay). All dogs were dosed with the appropriate test article subcutaneously in the dorsoscapular area. All four animals seroconverted to a positive test on SNAP®3Dx® (reversible flow chromatographic assay) E. canis by day 42. Production bleeds were taken on days 42 and 70 (approximately 50 ml blood that yielded approximately 25 ml sera).

FIG. 1 shows SNAP®3Dx® Assay (reversible flow chromatographic assay) evaluation of laboratory beagles. The SNAP® device (reversible flow chromatographic assay) was used as described by manufacturer. “Pre” sample is from day 0. “Post” sample is from day 42. The E. canis positive spot becomes positive in all 4 dogs for the day 42 sample. Similar results were observed for the day 70 sample.

Experiments with a third vaccine comprising a third adjuvant, BCG, (Calbiochem of EMD Biosciences, Inc. San Diego, Calif.) revealed similar results. Preparation of the third vaccine was identical to the preparations described for the Ribi adjuvant vaccine described above except: 1) formalin inactivation was for 24 hrs at 4 C, and 2) 1 mg of BCG was added. The vaccination schedule was day 0, day 14, with weekly bleeds assayed for reactivity with E. canis proteins.

Example 3 Enrichment of E. canis from Cell Culture Using PERCOLL® Gradients

For DNA isolation and western blot analysis, E. canis was enriched from cell culture using PERCOLL® density gradients. The process of isolating intracellular pathogens from cell culture, such as Ehrlichia, is a technique well known to those skilled in the art. For example, see Akira et al. (1982) Purification of Rickettsia tsutsugamushi by PERCOLL® density gradient centrifugation, Microbiol. Immunol., 26:321-328.

A typical E. canis enrichment began with 1.5 liters of infected cell culture (see above). The cells were centrifuged 6,000×g, the cell pellet retained and the supernatant discarded. The cell pellet was resuspended into 20 ml of PBS that was followed by a second centrifugation. The supernatant was discarded and supernatant retained. The pellet was then resuspended into 20 ml of PBS, sonicated for 5 seconds at 20 kHz, power setting 1.5 using a Branson sonicator. The sample was then centrifuged at 500×g for 5 minutes to pellet large debris.

PERCOLL® was added to the supernatant to a final concentration of 32% (4.5 ml of PERCOLL® with 10 ml of sample). The sample was loaded into Oak Ridge tubes compatible with a 70.1 Ti ultracentrifuge rotor, and centrifuged for 30 minutes at 63,000×g. The opaque band was collected using a Pasteur pipette. The opaque band is highly enriched for Ehrlichia (confirmed using light microscopy of the collected sample). After a 1:4 dilution with PBS, the sample was aliquoted and centrifuged at 12,000×g. The supernatant was discarded and the Ehrlichia pellet stored at −80° C.

Example 4 Testing of Sera or Plasma from Vaccinated and Infected Dogs by Western Blot

The use of 1-dimensional SDS-PAGE gel analysis and 2-dimensional gel analysis (1^(st) dimension isoelectric focusing, 2^(nd) dimension SDS-PAGE) is well known to those skilled in the art. For example see Current Protocols in Molecular Biology, eds. F. M. Ausubel et al., John Wiley & Sons Inc., 1997, pages 10.2.2-10.3.11. The use of western blots to analyze proteins separated using these methods are well known to those skilled in the art. For example see Current Protocols in Molecular Biology, eds. F. M. Ausubel et al., John Wiley & Sons Inc., 1997, pages 10.8.1-10.8.116.

Initial work was performed using western analysis of proteins separated with 1D gels (data not shown), followed by western analysis of proteins separated using 2D gels. Proteins from whole E. canis harvested from cell culture were analyzed using 2D gel electrophoresis (materials and reagents used as described by the manufacturer; Bio-Rad Life Sciences Research, Hercules, Calif. 94547). The amount of sample to load per gel was determined empirically (see FIG. 2). The proteins were blotted to nitrocellulose and probed using canine sera from laboratory beagles at day 0, dogs vaccinated with formalin inactivated E. canis antigen (see above), or sera from animals infected with E. canis (see FIGS. 3, 4 & 5).

Positive canine sera and plasma was isolated from dogs infected with E. canis. E. canis infection was verified by western analysis of lymphocytes harvested from whole blood from these dogs, and confirmed by use of the IDEXX SNAP®3Dx® assay (reversible flow chromatographic assay) with canine sera or plasma (commercially available from IDEXX Laboratories Inc., used as described by the manufacturer).

For western blot analysis proteins were separated using 1D SDS-PAGE or 2D isoelectric focusing/SDS-PAGE gels followed by electo-blotting of the proteins from the gels to nitrocellulose. The nitrocellulose blots were incubated in a blocking solution of 2.5% non fat dry milk dissolved into Tris buffered saline (pH 7.5), 0.05% TWEEN® 20 (polysorbate). Canine sera or plasma was diluted to the titer as described into buffer containing an E. coli lysate to block non-specific binding with 30% normal calf sera and incubated for 2 hrs at room temperature or over night at 4° C. After washing 3 times in TBS-TWEEN® (polysorbate) (0.05%), the blots were transferred to a buffer containing 50% fetal calf sera, 50% TBS-TWEEN® (polysorbate)-Kathon (0.05% & 0.5% respectively) to prevent nonspecific binding of a rabbit anti-canine Fc polyclonal antibody conjugated to horseradish peroxidase (Jackson Immuno Research, West Grove, Pa. 19390). The rabbit anti-canine Fc polyclonal antibody conjugate was diluted 1:5,000. The gels were washed 3 times with TBS TWEEN® (polysorbate) (0.05%), one time with TBS, and the presence of HRP detected using ECL western Blotting Detection Reagents (Amersham Biosciences, Piscataway, N.J. 08855-1327) used as described by manufacturer. Digital images of exposed X-ray film were captured using a GelDoc 2000 (Bio-Rad Inc.).

Example 5 Isolation of DNA from E. canis and Construction of a Lambda Expression Library and Screening of the E. canis Lambda Expression Library for Clones Having DIVA Activity

The preparation and screening of lambda expression libraries is a technique well known to those skilled in the art. For example, see Current Protocols in Molecular Biology, eds. F. M. Ausubel et al., John Wiley & Sons Inc., 1997, pages 5.1 through 5.8.6. For the construction of the expression library, genomic DNA was purified from E. canis isolated from cell culture by PERCOLL® gradient centrifugation (see above). DNA was purified using a genomic DNA purification kit from Qiagen Sciences (Germantown, Md.). A Lambda ZAP® II predigested EcoRI/CIAP Vector Kit (Stratagene Corp., La Jolla, Calif. 92037) was used as specified by the manufacturer for construction of the library. E. canis genomic DNA was partially digested with TSP509 and fragments ranging from 2-6 kb were isolated using agarose gel electrophoresis and ligated into the lambda vector. Phage were packaged and grown as specified by the manufacturer.

Approximately 120,000 individual lambda plaques were screened for binding to sera isolated from dogs identified as positive for infection with E. canis, but negative for reactivity with sera from animals vaccinated with formalin inactivated E. canis (see above). From the initial screen 84 individual plaques were identified as having this activity.

Lambda plaques were subjected to two rounds of plaque purification and retested to verify positive reactivity with sera from E. canis infected animals, negative reactivity when screened with sera from vaccinated animals.

Isolated lambda plaques were screened for cross reactivity with sera from animals identified as being seropositive for Anaplasma phagocytophilia, Borrelia burgdorferi (causative agent of Lyme disease), Rickettsia rickettsii (causative agent of Rocky Mountain Spotted Fever), Leptospira interrogans and Dirofilaria immitis (causative agent of canine heartworm).

At the end of the screening process, 43 lambda plaques were found to react with sera from animals infected with E. canis that did not react with sera from vaccinated dogs or sera from dogs infected with other canine pathogens (see above).

Using the ZAP® feature of the cloning vector as per the manufacturers instructions, inserts into the lambda vector were converted to plasmids. The plasmids were transformed into the E. coli strain XL-1 blue for protein expression and analysis of encoded proteins by western blot. The ends of the E. canis DNA inserts were subjected to DNA sequence analysis using T7 and T3 sequencing primers.

Sequence information from both the T7 and T3 reactions for all 43 clones was submitted for BLAST analysis to the NCBI website. Results were tabulated in an excel format. Based on sequence identity between the clone and the available shotgun genome sequence for E. canis (NCBI: NZ_AAEJ01000001), segments of genomic DNA for each clone were identified. Individual clones sharing common genes were grouped for further analysis by western blot using pools of infected and vaccinated canine sera. Based on similar banding patterns, duplicate clones were eliminated. Any clones showing reactivity to both sets of sera were eliminated. As a result of this analysis, 23 clones were selected for further evaluation. The grouping of the clones and the common antigen per group is shown in Table 2.

TABLE 2 Common Antigen Clone Number(s) 120 kDa Antigen 2, 10, 17, 33, 35, 79 Heat Shock Proteins 4, 9, 24, 66 ATPase 7, 84 Ribosomal Protein L1 21, 47, 65 200 kDa Antigen 26, 55, 76 Hypothetical Protein 75 Pyruvate Dehydrogenase 5 Ribosomal Protein (50S) 6 Unknown 57 Transcriptional Regulator 82

Example 6 Western Blot Analysis Using Individual E. canis Positive Canine Serum Samples

All 23 clones were analyzed on individual SDS-PAGE gels. Each gel was transferred to nitrocellulose and subjected to western blotting using individual samples of canine sera from dogs that were only positive for E. canis infections by ELISA/SNAP® (reversible flow chromatographic assay) testing. Canine serum was diluted 1:500 in the same diluent described in Example 4 containing E. coli lysate and reactivity was detected using standard colorometric horseradish peroxidase techniques (Opti-4CN, Bio-Rad). A total of thirteen individual canine serum samples were evaluated. Blots were compared across samples to determine the number of dogs showing reactivity to a predominant band or set of bands per clone. The results are summarized in Table 3 and FIG. 6 (clones listed in bold are depicted in the figure).

TABLE 3 Common Antigen Clone Number(s) Positive Reactors 120 kDa Antigen 2, 10, 17, 33, 35 13/13 Heat Shock Proteins 9 12/13 ATPase 7, 84 12/13 Ribosomal Protein L1 21, 47, 65 12/13 200 kDa Antigen 26, 55, 76 12/13

All 23 clones were also analyzed by western blot using pooled canine sera that had tested positive for other vector-borne infectious diseases. Samples testing positive by ELISA or SNAP® (reversible flow chromatographic assay) for the following single infections were evaluated: Heartworm, Lyme, Anaplasma phagocytophilum, or E. ewingii. None of the clones identified in the table above showed cross-reactivity with positive canine sera for these other vector-borne infections.

Example 7 Identification of Relevant Gene Segments Encoding E. canis Diva Antigens

a. 120 kDa Antigen

This antigen was previously described by Yu et al. (J Clin Microbiol. 2000 January; 38(1):369-74; see also, McBride et al., 2000 Infec. Immun. 68:13) and shown to be useful in the diagnosis of E. canis infections in dogs. This antigen has been described as both “p120” and “p140” E. canis antigen. See, id. Yu et al. explains that a recombinant protein expressed by the p120 gene has a molecular size of 140 kDa on a sodium dodecyl sulfate gel, which is larger than the predicted molecular mass of the protein. See, Yu et al., page 373. The Walker group (Yu et al, and McBride et al.) refer to the protein both as E. canis p120 and p140. Therefore, this disclosure uses both p120 and p140 interchangeably to describe this protein. The accession number for the E. canis p120/140 gene is AF112369 and the associated protein is AAD34330. See also, accession no. YP302666. Clones 2, 10, 17, and 33 contain full-length segments of the 120 kDa antigen gene. Clone 35 may contain a truncation of this gene. (See, SEQ ID NOs:1 and 2).

This gene was amplified from E. canis genomic DNA and subcloned into a pET expression system with a 6-His tag according to the manufacturer's instructions (Invitrogen). Sequencing results of this plasmid exactly matched the gene sequence encoding the protein shown in SEQ NO:ID 2, from amino acids 58 to 589. Protein lysates from BL21 bacteria induced to express this protein were analyzed by western blotting with infected canine sera and compared to western blots probed with sera from animals vaccinated with formalin inactivated E. canis cells. Consistent with previous findings, only sera from infected dogs recognized this protein of the expected molecular weight (data not shown).

P120 has a 36 amino acid motif that is repeated 14 times. See, SEQ ID NO:15. The repeated portion (underlined region in SEQ ID NO:15 is a 60 kD peptide). SEQ ID NO:16 shows the aligned 14 repeats. SEQ ID NO:17 shows the consensus sequence of the 14 repeats.

One embodiment of the invention provides a polypeptide comprising:

-   -   KEEX₁TPEVX₂AEDLQPAVDX₃SX₄EHSSSEVGX₅ KVSX₆TS (SEQ ID NO:17).     -   Where     -   X₁=S or N         -   X₂=K or R         -   X₃=G, D, or S         -   X₄=V or I         -   X₅=E or K         -   X₆=E or K             Another embodiment of the invention provides a multimeric             polypeptide where SEQ ID NO:17 is repeated two or more             times. The multimeric polypeptide can also comprise one or             more heterologous polypeptides.

In another embodiment, the invention provides a polypeptide of SEQ ID NO:21, XPEVKAEDLQPAVDGSVEHX, wherein each of the X's=0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 amino acids.

b. 200 kDa Antigen

This antigen was previously described by McBride et al. (J Clin Microbiol. 2001 January; 39(1):315-22) and shown to be useful in the diagnosis of ehrlichiosis. The accession number for this gene is AF252298 and associated protein AAK01145. A portion of this protein sequence is associated with a published patent (SEQ ID NO:2 of U.S. Pat. No. 6,355,777, accession number AAE96254). We have identified a different region of this protein that serves as diagnostic antigen for ehrlichiosis and a DIVA reagent. The portion of the gene spans from nucleotide 1081 of AF252298 through to the end, nucleotide 4266. (See SEQ ID NOs:3 and 4).

This gene was amplified from E. canis genomic DNA and subcloned into a pET expression system with a 6-His tag according to the manufacturer's instructions (Invitrogen). Sequencing results of this plasmid exactly matched the gene sequence encoding the protein shown in SEQ ID NO:4, from amino acids 1 to 1061. Protein lysates from BL21 bacteria induced to express this protein were analyzed by western blotting with infected canine sera and compared to western blots probed with sera from animals vaccinated with formalin inactivated E. canis. Consistent with previous findings, only sera from infected dogs recognized this protein of the expected molecular weight (data not shown).

c. ATPase

This gene (Locus tag “Ecan02000699”) has been predicted by automated computational analysis of the shotgun genome sequence of E. canis. It codes for a protein of more than 4000 amino acids (ZP_(—)00210575). The E. canis DIVA screen identified two separate regions of this gene and its associated protein as potential immunodominant antigens and DIVA reagents. The segments of the protein identified in clones 84 and 7 are amino acids 1984-2774 and 2980-3740, respectively, of accession number 46308382. (See SEQ ID NOs: 5, 6, 7, 8).

Both fragments of this gene was amplified from E. canis genomic DNA and subcloned separately into a pET expression system with a 6-His tag according to the manufacturer's instructions (Invitrogen). Sequencing results of this plasmid exactly matched the gene sequences associated with the proteins shown SEQ ID NOs:6 and 8, from amino acids 1 to 782 and 1 to 746 respectively. Protein lysates from BL21 bacteria induced to express these proteins were analyzed by western blotting with infected canine sera and compared to western blots probed with sera from animals vaccinated with formalin inactivated E. canis. Consistent with previous findings, only sera from infected dogs recognized these proteins of the expected molecular weight (data not shown).

d. Heat Shock Proteins

Although this clone contained a gene for the heat shock protein, GrpE, the gene sequence coding for the immunodominant antigen arises from a hypothetical protein sequence predicted by the automated computational analysis of the genome. Based on the molecular weight and pI of the protein, the gene of interest in clone 9 is locus number “Ecan02000495” and the associated protein 46308954.

Because this protein is only predicted from the computer annotation of the genome and has not been previously identified from E. canis organisms as an immunodominant protein, this is the first evidence that this gene is expressed in E. canis and stimulates an immune response in the infected canine host. The protein will be identified as the p16 antigen (see SEQ ID NO: 9 and 10).

This gene was amplified from the pBlueScript vector containing the genomic DNA of interest and subcloned into a pET expression system with a 6-His tag according to the manufacturer's instructions (Invitrogen). Sequencing results of this plasmid exactly matched the gene sequence associated with locus number “Ecan02000495”. Protein lysates from BL21 bacteria induced to express this protein were analyzed by western blotting with infected canine sera and compared to western blots probed with sera from animals vaccinated with formalin inactivated E. canis. Consistent with previous findings, only sera from infected dogs recognized this protein of the expected molecular weight (see FIG. 7).

e. Ribosomal Protein L1

This gene is identified by the locus tag “Ecan02000476” from the E. canis genome. The associated protein has the accession number ZP_(—)00211130 (see SEQ ID NOs:11 and 12). The identification of this protein has been predicted based on automated computational analysis of the genome. A BLAST analysis of this protein reveals that the sequence is about 70% identical to a surface protein of E. chaffeensis (Accession number 4894576). Immunoreactivity to the E. chaffeensis protein has previously been reported by Yu et al., (J Clin Microbiol. 1999 August; 37(8):2568-75). The E. chaffeensis protein (Accession number 4894576) is referred to as the 106 kDa protein precursor.

f. Possible Non-120 kDa Antigens

Within the genomic fragment containing the gene for the 120 kDa antigen, other genes are present that may also be immunodominant and DIVA reagents. For instance, clone 10 produces a different banding pattern on western blots probed with infected sera, compared to clones containing the 120 kDa antigen alone. Clone 10 contains genetic information for the VirD4 components of a Type IV secretory pathway and this gene sequence is identified by the locus tag “Ecan02000624”. This gene codes for a protein of 723 amino acids (ZP_(—)00211244), but only a portion of this protein appears to be expressed by clone 10, as determined by the molecular weight of the protein identified on the gel (see SEQ ID NOs:13 and 14).

Example 8 Evaluation of E. canis P140 Peptides

Sera from beagles immunized with formalin inactivated E. canis (vaccine samples) were tested using a microtiter-plate based immunoassay prepared using synthetic peptides derived from E. canis p140 protein (also known as p120, see Example 7).

Preparation of Formalin Inactivated E. Canis and Immunization of Beagles were Described in Examples 1 and 2. Samples from immunized beagles were tested using microtiter-plate based immunoassays prepared using synthetic peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20) in indirect and direct assay formats.

Indirect Assay Format

Samples were tested using microtiter-plate based immunoassays prepared using the synthetic peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20). Individual peptides were immobilized on microtiter wells by direct adsorption. A dilution of the test sample (1:100) was added to the microtiter well and unbound antibody was removed by washing. Antibody bound to the immobilized peptide was detected by reaction with an anti-species, in this case canine, horseradish peroxidase (HRPO) conjugate (1:2000 dilution), washing and addition of a HRPO substrate. The absorbance (A650) of individual microtiter wells was determined using a microtiter plate reader.

Direct Assay Format

Individual peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20) were conjugated to bovine serum albumin and immobilized on microtiter wells by direct adsorption. Synthetic peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20) were conjugated to an indicator reagent, horseradish peroxidase (HRPO). The test sample and the immunoassay peptide/indicator were added to a microtiter well coated with the corresponding peptide, which was incubated and washed. Antibody bound to the immobilized peptide and the peptide/indicator reagent was detected by addition of an HRPO substrate reagent. The absorbance (A650) of individual microtiter wells was determined using a microtiter plate reader.

Assay results are shown in Table 4. The positive control (PC, ID 1049:16E) and negative control (NC, 3818:57B) were known E. canis positive and negative serum samples, respectively. All samples were tested using the commercially available SNAP® 4Dx® test (reversible flow chromatographic assay) for E. canis antibody. Results for sequential temporal samples from 6 dogs (CVYDEH, CWMBDC, CVXCSM, CWMAXK, CVSCVA and CVXCAP) receiving the formalin inactivated E. canis antigen formulated using different adjuvants are shown for day 0 to day 42 post-immunization. Results of the SNAP® 4Dx® test demonstrate that an antibody response was induced in the vaccinated animals. None of the serum samples from vaccinated animals was reactive in the direct assay format. Several samples (for example from dog CWMAXK) had high background reactions in the indirect assay format.

The results demonstrate that antibody induced as a result of immunization using formalin inactivated vaccine was significantly non-reactive to the synthetic peptides derived from an E. canis p140 protein. (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20).

TABLE 4 Reaction of sera from dogs immunized with formalin inactivated E. canis antigen measured using microtiter assays prepared using peptides derived from E. canis p140 protein. (SEQ ID NO: 18, SEQ ID NO: 19 and SEQ ID NO: 20). Indirect Plate Results Direct Plate Results (A650) (A650) 4Dx ® E. canis SEQ ID SEQ ID SEQ ID SEQ ID SEQ ID SEQ ID Sample Result NO: 18 NO: 19 NO: 20 NO: 18 NO: 19 NO: 20 1049:16E (PC) 0.72 2.071 2.075 1.867 2.049 1.821 1.495 3818:57B (NC) N 0.051 0.058 0.050 0.034 0.033 0.035 CVYDEH day 0 N 0.050 0.062 0.045 0.034 0.034 0.035 day 7 N 0.048 0.052 0.042 0.033 0.032 0.036 day 14 N 0.051 0.055 0.048 0.036 0.034 0.038 day 21 N 0.044 0.062 0.051 0.035 0.034 0.040 day 28 0.04 (vw+) 0.054 0.073 0.055 0.036 0.033 0.034 day 35 0.07 (vw+) 0.049 0.058 0.047 0.033 0.035 0.039 day 42 N 0.051 0.059 0.053 0.034 0.035 0.040 CWMBDC day 0 0.08 0.054 0.085 0.082 0.035 0.033 0.038 day 7 0.20 0.064 0.078 0.072 0.038 0.035 0.035 day 14 0.30 0.058 0.081 0.085 0.038 0.033 0.040 day 21 0.24 0.051 0.101 0.078 0.037 0.040 0.039 day 28 0.22 0.049 0.082 0.073 0.034 0.036 0.033 day 35 0.17 0.043 0.068 0.081 0.033 0.040 0.035 day 42 0.11 0.044 0.071 0.074 0.031 0.034 0.031 CVXCSM day 0 N 0.049 0.082 0.051 0.033 0.035 0.034 day 7 N 0.038 0.076 0.052 0.034 0.033 0.037 day 14 N 0.044 0.069 0.049 0.033 0.032 0.038 day 21 0.10 (w+) 0.038 0.054 0.045 0.035 0.035 0.036 day 28 0.10 (w+) 0.044 0.060 0.049 0.036 0.033 0.035 day 35 0.08 (vw+) 0.040 0.062 0.053 0.034 0.035 0.041 day 42 0.05 (vw+) 0.041 0.057 0.049 0.033 0.035 0.036 CWMAXK day 0 0.07 (vw+) 0.043 0.078 0.054 0.034 0.039 0.037 day 7 0.41 0.082 0.475 0.413 0.034 0.034 0.045 day 14 0.44 0.049 0.782 0.607 0.034 0.035 0.044 day 21 0.36 0.092 0.587 0.440 0.033 0.037 0.038 day 28 0.39 0.063 0.407 0.258 0.037 0.034 0.038 day 35 0.41 0.056 0.286 0.212 0.036 0.034 0.037 day 42 0.35 0.048 0.196 0.155 0.034 0.034 0.041 CVSCVA day 0 0.10 (w+) 0.039 0.084 0.084 0.033 0.033 0.038 day 7 0.37 0.040 0.107 0.066 0.032 0.032 0.036 day 14 0.14 0.053 0.151 0.062 0.035 0.033 0.039 day 21 0.33 0.057 0.131 0.072 0.035 0.033 0.034 day 28 0.29 0.049 0.104 0.058 0.035 0.034 0.036 day 35 0.36 0.043 0.108 0.079 0.034 0.039 0.040 day 42 0.32 0.047 0.117 0.044 0.033 0.036 0.037 CVXCAP day 0 N 0.041 0.065 0.040 0.032 0.035 0.032 day 7 0.34 0.058 0.106 0.068 0.036 0.033 0.033 day 14 0.30 0.087 0.150 0.112 0.034 0.035 0.039 day 21 0.35 0.065 0.120 0.086 0.039 0.036 0.041 day 28 0.19 0.054 0.103 0.059 0.035 0.036 0.032 day 35 0.18 0.046 0.092 0.047 0.033 0.033 0.039 day 42 0.19 0.051 0.067 0.047 0.035 0.035 0.038

Example 9

Sera from known E. canis positive and negative dogs was tested using a microtiter-plate based immunoassay prepared using the synthetic peptides obtained from E. canis protein p140 protein (also known as p120, see Example 7).

E. canis positive and negative field samples were obtained and tested using the SNAP® 4Dx® test (reversible flow chromatographic assay) for antibody to E. canis. Samples were then tested using indirect and direct microtiter plate format assays produced using synthetic peptides derived from the E. canis P140 protein (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20).

Indirect Assay Format

Samples were tested using microtiter-plate based immunoassays prepared using the synthetic peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20). Individual peptides were immobilized on microtiter wells by direct adsorption. A dilution of the test sample (1:100) was added to the microtiter well and unbound antibody was removed by washing. Antibody bound to the immobilized peptide was detected by reaction with an anti-species, in this case canine, horseradish peroxidase (HRPO) conjugate (1:2000 dilution), washing and addition of a HRPO substrate. The absorbance (A650) of individual microtiter wells was determined using a microtiter plate reader.

Direct Assay Format

Individual peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20) were conjugated to bovine serum albumin and immobilized on microtiter wells by direct adsorption. The synthetic peptides (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20) were conjugated to the indicator reagent, horseradish peroxidase (HRPO). The test sample and the immunoassay peptide/indicator were added to a microtiter well coated with the corresponding peptide, which was incubated and washed. Antibody bound to the immobilized peptide and the peptide/indicator reagent was detected by addition of an HRPO substrate reagent. The absorbance (A650) of individual microtiter wells was determined using a microtiter plate reader.

Table 4 shows results for E. canis positive and negative field samples tested using the indirect assay format. The positive control (PC, ID 1049:16E) and negative control (NC, 3818:57B) were known E. canis positive and negative serum samples, respectively. Samples were determined to be E. canis antibody positive or negative using the SNAP® 4Dx® test (reversible flow chromatographic assay). Assay results are shown for microtiter plate format assays made using peptide reagents (SEQ ID:18, SEQ ID:19 and SEQ ID:20).

Table 5 shows results for E. canis positive and negative field samples tested using the direct assay format. The positive control (PC, ID 1049:16E) and negative control (NC, 3818:57B) were known E. canis positive and negative serum samples, respectively. Samples were determined to be E. canis antibody positive or negative using the SNAP® 4Dx® test (reversible flow chromatographic assay). Assay results are shown for microtiter plate format assays made using peptide reagents (SEQ ID:18, SEQ ID:19 and SEQ ID:20).

TABLE 5 E. canis positive and negative field samples tested using the indirect microtiter plate format assay constructed using P140 peptides (SEQ ID NO: 18, SEQ ID NO: 19 and SEQ ID NO: 20). Absorbance at 650 nM 4Dx ® SEQ ID SEG ID SEQ ID Sample Result No: 18 NO: 19 no: 20 1049:16E (PC) 2.292 2.735 2.584 3818:57B (NC) 0.051 0.065 0.045 EC+ HP 127 0.07 0.042 0.050 0.038 EC+ HP 143 0.08 2.867 2.825 2.731 EC+ HP 147 0.09 2.370 2.661 2.658 EC+ HP 151 0.21 2.176 2.093 2.535 EC+ HP 161 0.18 1.708 2.178 2.551 EC+ HP 165 0.08 2.690 2.492 2.525 EC+ HP 172 0.07 0.229 0.902 2.197 EC+ HP 185 0.38 2.497 2.622 2.704 EC+ HP 186 0.26 2.899 2.979 2.794 EC+ HP 188 0.40 2.482 2.578 2.898 EC+ HP 190 0.21 2.484 2.534 2.632 EC+ HP 192 0.18 1.473 2.132 2.526 EC+ HP 194 0.43 2.583 2.429 2.539 EC+ HP 197 0.22 2.150 2.239 2.537 EC+ HP 201 0.36 2.449 2.472 2.519 EC+ HP 206 0.10 2.477 2.247 2.549 EC+ HP 207 0.08 2.030 2.359 2.369 EC+ HP 209 0.20 0.262 0.218 1.102 EC+ HP 213 0.21 1.471 1.662 2.406 EC+ HP 215 0.19 2.144 2.431 2.721 EC− HP 116 0.02 0.110 0.065 0.070 EC− HP 119 0.02 0.102 0.091 0.079 EC− HP 120 0.01 0.058 0.063 0.045 EC− HP 121 0.02 0.054 0.064 0.057 EC− HP 122 0.03 0.053 0.059 0.040 EC− HP 124 0.02 0.055 0.061 0.052 EC− HP 128 0.02 0.068 0.072 0.054 EC− HP 129 0.02 0.056 0.057 0.044 EC− HP 130 0.01 0.049 0.048 0.039 EC− HP 131 0.01 0.051 0.053 0.043 EC− HP 132 0.03 0.057 0.061 0.038 EC− HP 134 0.02 0.059 0.084 0.114 EC− HP 137 0.03 0.043 0.046 0.037 EC− HP 138 0.01 0.055 0.063 0.048 EC− HP 139 0.01 0.064 0.062 0.056 EC− HP 140 0.00 1.574 2.444 2.491 EC− HP 142 0.02 0.065 0.068 0.069 EC− HP 144 0.02 0.080 0.079 0.081 EC− HP 145 0.01 1.564 1.934 2.095 EC− HP 148 0.01 0.037 0.043 0.043

TABLE 6 E. canis positive and negative field samples tested using the direct microtiter plate format assay constructed using P140 peptides (SEQ ID NO: 18, SEQ ID NO: 19 and SEQ ID NO: 20). 3Dx ® Absorbance at 650 nM SNAP SEQ ID SEQ ID SEQ ID Sample S-Bkg NO: 18 NO: 19 NO: 20 1049:16E (PC) 0.72 2.753 2.079 2.018 3818:57B (NC) Neg 0.034 0.035 0.036 1049:16A E. canis pos 0.28 0.201 0.173 1.448 1049:16G E. canis pos 0.50 0.034 0.034 0.039 1049:16Q E. canis pos 0.39 2.308 1.933 2.151 1049:16U E. canis pos 0.56 0.627 2.038 2.254 1061:03B E. canis pos 0.49 0.083 0.338 0.889 1061:03I E. canis pos 0.27 2.766 2.593 1.646 1177:21D E. canis pos 0.15 0.042 0.046 0.126 1177:21G E. canis pos 0.41 1.087 1.675 1.835 1177:21K E. canis pos 0.34 0.681 1.930 2.010 1177:63O E. canis pos 0.41 0.146 0.112 1.587 1183:85A E. canis pos 0.49 2.768 2.757 2.476 1256:31I E. canis pos 0.23 0.044 0.086 0.143 813:91F E. canis pos 0.41 1.239 1.570 1.993 813:91I E. canis pos 0.41 0.212 0.517 1.646 EC 10 E. canis pos 0.37 0.236 0.302 0.465

The results demonstrate that antibody induced as a result of natural infection was reactive to the synthetic peptides derived from the E. canis p140 protein. (SEQ ID NO:18, SEQ ID NO:19 and SEQ ID NO:20).

Example 10 Testing of Sera from Known E. canis Positive and Negative Dogs Using a Microtiter-plate Based Immunoassay Prepared Using the Synthetic Peptides (SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24) Obtained from the E. canis Protein p16 Protein. Assays were Performed Using the Indirect Assay Format Making Use of Anti-Canine HRPO Conjugate as the Indicator.

Sera from six E. canis-antibody positive and three E. canis-antibody negative canines were obtained from Sinclair Research (Columbia, Mo.). Serum samples were found to be positive or negative by testing using the licensed reversible flow chromatographic binding assay IDEXX SNAP® 4Dx® test (reversible flow chromatographic assay) for E. canis antibody. Reversible flow chromatographic SNAP® assay (reversible flow chromatographic assay) results are shown in Table 7.

Samples were tested using microtiter-plate based immunoassays prepared using synthetic peptides (SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24) derived from the E. canis p16 surface protein. The synthetic peptide was immobilized in Immulon microtiter wells at 0.25 ug/ml (SEQ ID NOs: 22 and 23, or at 0.5 ug/ml (SEQ ID NO: 24)). A dilution of the test sample (1:100) was added to the microtiter well and unbound antibody was removed by washing. Antibody bound to the immobilized peptide was detected by reaction with an anti-species, in this case canine, horseradish peroxidase (HRPO) conjugate (1:2000 dilution), washing and addition of HRPO substrate. The absorbance at 650 nm (A650) of fluid in individual microtiter wells was determined using a microtiter-plate reader.

Results:

Results for positive and negative samples are shown in Table 7. Positive samples HP-319, HP-322, HP-326, HP-342, HP-354, HP-358 were reactive to the peptide sequences shown in SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24. Negative samples HP-302, HP-303 and HP-306 were nonreactive to the peptide sequences shown in SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24.

Conclusions:

The results demonstrate that antibody induced as a result of natural infection was reactive to the synthetic peptides derived from the E. canis p16 protein (SEQ ID NO:22, SEQ ID NO:23 and SEQ NO:24) in the indirect assay format described above.

TABLE 7 Assay results for positive and negative canine samples using E. canis synthetic peptide (SEQ ID NO: 22, SEQ ID NO: 23 and SEQ ID NO: 24) coated microtiter wells and anti-species conjugate as indicator. A650 is absorbance at 650 nm. The “4Dx ® SNAP ®” (reversible flow chromatographic assay) column presents the results from the reversible flow chromatographic SNAP ® 4Dx ® assay (reversible flow chromatographic assay). Plate Results (A650) SEQ ID SEQ ID SEQ ID 4Dx NO: 22 NO: 23 NO: 24 Sample SNAP A650 Result A650 Result A650 Result 1049:16E pos 1.733 pos 2.309 pos 1.943 pos (PC) 3818:57B neg 0.046 neg 0.044 neg 0.041 neg (NC) HP-319 pos 1.274 pos 1.765 pos 0.755 pos HP-322 pos 1.247 pos 1.996 pos 0.692 pos HP-326 pos 1.656 pos 2.159 pos 0.991 pos HP-342 pos 0.704 pos 1.480 pos 0.277 pos HP-354 pos 1.220 pos 1.745 pos 0.573 pos HP-358 pos 1.890 pos 2.270 pos 0.342 pos HP-302 neg 0.043 neg 0.043 neg 0.032 neg HP-303 neg 0.036 neg 0.039 neg 0.029 neg HP-306 neg 0.044 neg 0.039 neg 0.039 neg

Example 11 Testing of Sera from Known E. canis Positive and Negative Dogs Using a Microtiter-plate Based Immunoassay Prepared Using the Synthetic Peptides (SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24) Derived from the E. canis p16 Protein Sequence. Assays were Performed Using the Direct Assay Format Making Use of HRPO-labeled Peptide as the Indicator.

Sera from seven E. canis-antibody positive and three E. canis-antibody negative canines were obtained from field dogs. Serum samples were found to be positive or negative by testing using the licensed reversible flow chromatographic IDEXX SNAP® 3Dx® (reversible flow chromatographic assay) for E. canis antibody. Assay results are shown in Table 8.

Samples were tested using a microtiter-plate based immunoassay prepared using the synthetic peptides (SEQ ID NO:22, SEQ ID NO:23 and SEQ NO:24) derived from the E. canis P16 surface protein. The synthetic peptides were immobilized on microtiter plate wells at 1 ug/ml. Separate quantities of the synthetic peptides were conjugated to the indicator reagent horseradish peroxidase (HRPO). The test sample and the peptide:HRPO conjugate (1 ug/ml) were added to the peptide-coated microtiter well, which was incubated and washed. Sample antibody bound to the immobilized peptide and the peptide::HRPO conjugate was immobilized in the microtiter well. This complex was detected by addition of an HRPO substrate reagent. The optical density of individual microtiter wells was determined using a microtiter plate reader.

Results:

Results for positive and negative samples are shown in Table 8. Positive samples 813:91I, 1049:16A, 1049:16U, 1061:03I, 1177:21G, 1177:21K and 1177:63O were reactive to the peptide sequences shown in SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24. Negative samples 3818:57A, 3818:57C and 3818:57D were nonreactive to the peptide sequences shown in SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24.

Conclusions:

The results demonstrate that antibody induced as a result of natural infection was reactive to the synthetic peptides derived from the E. canis p16 protein (SEQ ID NO:22, SEQ ID NO:23 and SEQ NO:24) in the direct assay format described above.

TABLE 8 Assay results for positive and negative canine field samples using E. canis synthetic peptide-coated microtiter wells (SEQ ID NO: 22, SEQ ID NO: 23 and SEQ ID NO: 24) and E. canis synthetic peptide-conjugates (SEQ ID NO: 22, SEQ ID NO: 23 and SEQ ID NO: 24) as indicators. A650 is absorbance at 650 nm. The “3Dx ® SNAP ®” (reversible flow chromatographic assay) column presents the results from the reversible flow chromatographic SNAP ® 3Dx ® assay (reversible flow chromatographic assay). Plate Results (A650) SEQ ID SEQ ID SEQ ID 3Dx NO: 22 NO: 23 NO: 24 Sample SNAP A650 Result A650 Result A650 Result 1049:16E pos 2.497 pos 2.908 pos 1.367 pos (PC) 3818:57B neg 0.038 neg 0.041 neg 0.056 neg (NC) 813:91I pos 1.244 pos 1.828 pos 0.651 pos 1049:16A pos 0.547 pos 0.819 pos 0.116 pos 1049:16U pos 2.653 pos 3.531 pos 1.031 pos 1061:03I pos 0.665 pos 1.801 pos 0.127 pos 1177:21G pos 1.484 pos 2.353 pos 0.444 pos 1177:21K pos 2.612 pos 3.049 pos 1.077 pos 1177:63O pos 0.290 pos 2.091 pos 0.215 pos 3818:57A neg 0.039 neg 0.037 neg 0.041 neg 3818:57C neg 0.038 neg 0.036 neg 0.042 neg 3818:57D neg 0.037 neg 0.037 neg 0.040 neg

Example 12 Assay Results for Sera from 6 Dogs Experimentally Infected with E. canis Using Synthetic Peptide (SEQ ID NO:23) Coated Microtiter Plates and Anti-canine conjugate as indicator

Six naïve dogs were experimentally infected with the Louisiana isolate of E. canis. Serum samples were obtained on days 3, 7, 10, 13, 17, 21, 24, 28 and 35 post infection. Samples were tested using microtiter-plate based immunoassays prepared using the p16-2 synthetic peptide (SEQ ID NO:23) derived from the E. canis p16 surface protein. The synthetic peptide was immobilized in microtiter wells, a dilution of the test sample (1:100) was added to the microtiter well and unbound antibody was removed by washing. Antibody bound to the immobilized peptide was detected by reaction with an anti-canine, horseradish peroxidase (HRPO) conjugate (1:2000 dilution), washing and addition of HRPO substrate. The optical density of individual microtiter wells was determined using a microtiter plate reader.

Results:

Assay results are shown in Table 9. All 6 dogs converted from a negative status to a positive status following experimental infection as measured by the commercially available reversible flow chromatographic SNAP® 4Dx® assay (reversible flow chromatographic assay). Sera from all dogs reacted to the E. canis p16-peptide shown in SEQ ID NO:23 at various times post infection. The times between experimental infection and initial reaction to the SEQ ID NO:23 peptide were as follows: Dog 108532, 17 days post-infection; Dog 115853, 13 days post-infection; Dog 265006, 17 days post-infection; Dog 268830, 13 days post-infection; Dog 285307, 13 days post-infection and Dog 533573, 13 days post-infection.

Conclusions:

The results demonstrate that antibody induced as a result of experimental infection was reactive to the synthetic peptide derived from the E. canis p16 protein (SEQ ID NO:23).

TABLE 9 Assay results using for serum from dogs experimentally infected using E. canis synthetic peptide (SEQ ID NO: 23) coated microtiter plates and anti-species conjugate as indicator. A650 is absorbance at 650 nm. The “4Dx ® SNAP ®” (reversible flow chromatographic assay) column presents the results from the reversible flow chromatographic SNAP ® 4Dx ® assay (reversible flow chromatographic assay). 4Dx SEQ ID Time SNAP NO: 23 Canine Sample Point EC A650 Result 1049:16E PC 2.253 + 21172M NC 0.035 N Cutoff 0.070 108532 E1-0 d3 Neg 0.034 N E1-1 d7 Neg 0.035 N E1-2 d10 Neg 0.037 N E1-3 d13 Neg 0.069 N E1-4 d17 Neg 1.501 + E1-5 d21 Neg 1.662 + E1-6 d24 +(.04) 1.572 + E1-7 d28 +(.06) 1.604 + E1-8 d35 +(.10) 2.056 + 115853 E2-0 d3 Neg 0.034 N E2-1 d7 Neg 0.033 N E2-2 d10 Neg 0.039 N E2-3 d13 Neg 1.246 + E2-4 d17 Neg 1.393 + E2-5 d21 Neg 1.227 + E2-6 d24 +(.04) 1.549 + E2-7 d28 +(.03) 1.580 + E2-8 d35 +(.04) 1.939 + 265006 E3-0 d3 Neg 0.042 N E3-1 d7 Neg 0.035 N E3-2 d10 Neg 0.038 N E3-3 d13 Neg 0.052 N E3-4 d17 Neg 0.944 + E3-5 d21 Neg 1.031 + E3-6 d24 Neg 0.962 + E3-7 d28 Neg 0.840 + E3-8 d35 +(.05) 1.303 + 268830 E4-0 d3 Neg 0.037 N E4-1 d7 Neg 0.034 N E4-2 d10 Neg 0.038 N E4-3 d13 Neg 0.112 + E4-4 d17 Neg 1.432 + E4-5 d21 +(.05) 1.364 + E4-6 d24 +(.05) 1.167 + E4-7 d28 +(.09) 1.412 + E4-8 d35 +(.12) 1.986 + 285307 E5-0 d3 Neg 0.036 N E5-1 d7 Neg 0.046 N E5-2 d10 Neg 0.044 N E5-3 d13 Neg 1.018 + E5-4 d17 Neg 1.597 + E5-5 d21 +(.05) 1.478 + E5-6 d24 +(.04) 1.282 + E5-7 d28 +(.04) 1.329 + E5-8 d35 +(.10) 1.838 + 533573 E6-0 d3 Neg 0.037 N E6-1 d7 Neg 0.035 N E6-2 d10 Neg 0.032 N E6-3 d13 Neg 0.909 + E6-4 d17 Neg 1.832 + E6-5 d21 +(.08) 1.883 + E6-6 d24 +(.08) 1.964 + E6-7 d28 +(.06) 1.963 + E6-8 d35 +(.15) 2.166 +

Example 13 Preparation of Formalin Inactivated E. canis for Immunization into Dogs

E. canis was grown in canine cell culture using methods described in the literature. See Breitschwerdt, Antimicrobial Agents and Chemotherapy, 1998, Vol 42:362-368. Using light microscopy, 030 cells were estimated to be greater than 80% infected by E. canis. Two liters of E. canis infected cell culture were collected, centrifuged and the pellet retained yielded 7.31 gms of material (wet weight). It is presumed water made up 80% of the weight of the material, giving an estimated dry weight of 1.462 gms (20% of the weight of the material). The cell pellet was resuspended to 20 mg/ml in PBS (dry weight) for a total volume of 73 ml.

To this resuspended cell pellet, 0.73 ml of formalin solution was added (Sigma Catalog HT50-1-2 Formalin Solution 10%, neutral buffered) for a final formaldehyde concentration of 0.04%. The solution was stirred 12 to 24 hrs at 4° C. The inactivated mixture was centrifuged and the cell pellet retained. The pellet was washed by resuspension into 250 mls of PBS. The material was collected by centrifugation and the wash was repeated one time.

The sample was aliquoted to 73 screw cap vials and frozen at −80° C. Each vial contains 20 mgs (dry weight) of formalin inactivated E. canis cell culture, suitable for combining with the appropriate adjuvant for immunization into animals.

Example 14 Preparation of Formalin Inactivated E. canis with Two Different Adjuvants and Protocol for the Immunization of Beagles with E. canis Antigen.

For immunization into kennel-housed dogs (laboratory beagles) formalin inactivated E. canis antigen was formulated using three different adjuvants. Formalin inactivated E. canis antigen was prepared with Ribi adjuvant (Corixa Corp., Seattle Wash.) using the protocol described by the manufacturer. Each dose contained approximately 20 mg of formalin inactivated E. canis cell culture (dry weight). An additional formulation of immunogen was prepared using a combination of the Ribi adjuvant (described above) and the adjuvant BCG (1 mg per dose) (Calbiochem of EMD Biosciences, Inc., San Diego, Calif.). Two groups consisting of three dogs each were dosed 4 times over a period of 170 days (days 0, 14, 156, 170) using inactivated E. canis containing either Ribi adjuvant alone or Ribi adjuvant and BCG adjuvant in combination. In an effort to produce a vaccine-induced hyperimmune state, all dogs received a single dose (day 247) of formalin inactivated E. canis formulated using the adjuvant TiterMax® (CytRx Corp., Norcross, Ga.) or the adjuvant TiterMax® and the adjuvant BCG in combination using the manufacturer's instructions. Dogs were administered vaccines according to the following schedule:

Vaccine Administered/Day of Vaccination E. canis/ E. canis/ E. canis/ TiterMax + Dog ID E. canis/Ribi Ribi + BCG TiterMax BCG CVYDEH 0, 14, 156, 247 170 CWMBDC 0, 14, 156, 247 170 CVXCSM 0, 14, 156, 247 170 CWMAXK 0, 14, 156, 247 170 CVSCVA 0, 14, 156, 247 170 CVXCAP 0, 14, 156, 247 170

The IACUC committee of Covance Research Products Inc. approved the protocol for immunization of laboratory beagles. All dogs were dosed with the appropriate test article subcutaneously in the dorsoscapular area. On day 0 all 6 dogs were found to be sero-negative using both the reversible flow chromatographic SNAP® 3Dx® diagnostic (reversible flow chromatographic assay) as well as western blot analysis using E. canis organism. All six animals seroconverted to a positive test on the reversible flow chromatographic SNAP®3Dx® E. canis assay (reversible flow chromatographic assay) by day 42. Production bleeds were taken on days 226, 261, 268 and 282. (approximately 50 ml blood that yielded approximately 25 ml sera).

Example 15 Testing of Sera from Beagles Immunized with Formalin Inactivated E. canis (Vaccine Samples) Using a Microtiter-plate Based Immunoassay Prepared Using the Synthetic Peptides (SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24) Obtained from the E. canis Protein p16 Protein

Preparation of the formalin inactivated E. canis and immunization of beagles were described in Examples 13 and 14. Samples from immunized beagles were tested using the direct microtiter-plate based immunoassays prepared using the synthetic peptides (SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24).

Direct Assay Format

Samples were tested using microtiter-plate based immunoassays prepared using the synthetic peptides (SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24). The synthetic peptides were immobilized on microtiter plate wells at 1.0 ug/ml. Separate quantities of the synthetic peptides were conjugated to the indicator reagent horseradish peroxidase (HRPO). The test sample and the immunoassay peptide/indicator were added to the peptide-coated microtiter well, which was incubated and washed. Antibody bound to the immobilized peptide and the peptide/indicator reagent was immobilized in the microtiter well. This complex was detected by addition of an HRPO substrate reagent. The optical density of individual microtiter wells was determined using a microtiter plate reader.

Results

Assay results are shown in Table 10. The positive control (PC, ID 1049:16E) and negative control (NC, 3818:57 B) were known E. canis positive and negative serum samples, respectively. All samples were tested using the commercially available the reversible flow chromatographic SNAP® 4Dx® test (reversible flow chromatographic assay) for E. canis antibody. Results for sequential temporal samples from the 6 dogs (CVYDEH, CWMBDC, CVXCSM, CWMAXK, CVSCVA and CVXCAP) receiving the formalin inactivated E. canis antigen formulated using different adjuvants are shown for day 226, day 261, day 268 and day 282 post-immunization. Results of the reversible flow chromatographic SNAP® 4Dx® test demonstrate that an antibody response was induced in the vaccinated animals. None of the serum samples from vaccinated animals was reactive in the peptide (SEQ ID NO:22, SEQ ID NO:23 and SEQ ID NO:24) microtiter plate-format assay.

TABLE 10 Assay results using for serum from dogs immunized with formalin inactivated E. canis antigen measured using E. canis synthetic peptide (SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO: 24) coated microtiter plates synthetic peptide-conjugate as indicator. OD is optical density. The “4Dx ® SNAP ®” (reversible flow chromatographic assay) column presents the results from the reversible flow chromatographic SNAP ® 4Dx ® assay (reversible flow chromatographic assay). Plate Results SEQ ID SEQ ID SEQ ID 4Dx SNAP NO: 22 NO: 23 NO: 24 Adjuvant Sample OD/(result) OD RESULT OD RESULT OD RESULT 1049:16E (PC) 0.72 2.276 2.865 1.021 3818:57B (NC) neg 0.043 neg 0.044 neg 0.042 neg Ribi CVYDEH day neg 0.038 neg 0.056 neg 0.037 neg 226 day 261 0.07 (pos) 0.037 neg 0.046 neg 0.035 neg day 268 0.17 (pos) 0.045 neg 0.057 neg 0.038 neg day 282 0.18 (pos) 0.035 neg 0.048 neg 0.034 neg Ribi CWMBDC day 0.08 (pos) 0.050 neg 0.052 neg 0.043 neg 226 day 261 0.45 (pos) 0.044 neg 0.090 neg 0.039 neg day 268 0.40 (pos) 0.039 neg 0.064 neg 0.038 neg day 282 0.30 (pos) 0.038 neg 0.058 neg 0.040 neg Ribi CVXCSM neg 0.034 neg 0.038 neg 0.042 neg day226 day 261 neg 0.044 neg 0.073 neg 0.071 neg day 268 0.14 (pos) 0.042 neg 0.038 neg 0.041 neg day 282 0.23 (pos) 0.044 neg 0.038 neg 0.054 neg Ribi + BCG CWMAXK day 0.07 (pos) 0.038 neg 0.035 neg 0.039 neg 226 day 261 0.26 (pos) 0.043 neg 0.037 neg 0.036 neg day 268 0.36 (pos) 0.045 neg 0.043 neg 0.034 neg day 282 0.34 (pos) 0.038 neg 0.036 neg 0.034 neg Ribi + BCG CVSCVA day  .10 (pos) 0.039 neg 0.036 neg 0.041 neg 226 day 261 0.51 (pos) 0.041 neg 0.036 neg 0.036 neg day 268 0.45 (pos) 0.043 neg 0.035 neg 0.035 neg day 282 0.47 (pos) 0.036 neg 0.037 neg 0.036 neg Ribi + BCG CVXCAP day neg 0.041 neg 0.036 neg 0.034 neg 226 day 261 0.51 (pos) 0.054 neg 0.046 neg 0.047 neg day 268 0.42 (pos) 0.041 neg 0.045 neg 0.043 neg day 282 0.48 (pos) 0.035 neg 0.034 neg 0.036 neg Conclusions

The results demonstrate that antibodies induced as a result of immunization using formalin inactivated E. canis antigen were reactive on the reversible flow chromatographic SNAP® 4Dx® test (reversible flow chromatographic assay) which would indicate that an anti-E. canis antibody response was initiated. These same samples were nonreactive to the synthetic peptides derived from the E. canis P16 protein (SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24).

Sera from dogs immunized with formalin inactivated E. canis antigen were nonreactive to the peptides derived from the E. canis P16 protein (SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24). The synthetic peptides (SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24) were nonreactive to antibody induced as a result of vaccination.

Example 15 Monitoring Treatment of E. canis Infection

Six dogs were experimentally infected with E. canis. Doxycycline was administered at 28 days post-infection. Antibodies specific for E. canis were detected using SEQ ID NO:23 with an indirect assay protocol. Polypeptides shown in SEQ ID NO:23 were immobilized on microtiter wells by direct adsorption. A dilution of the test sample (1:100) was added to the microtiter well and unbound antibody was removed by washing. Antibody bound to the immobilized peptide was detected by reaction with an anti-species, in this case rabbit anti-canine horseradish peroxidase (HRPO) conjugate (1:1000 dilution). The absorbance (A650) of individual microtiter wells was determined using a microtiter plate reader. The negative cutoff was 2× the negative control O.D. value.

The results are shown in FIG. 8. The E-1, E-2, E-3, E-4, E-5, and E-6 dogs were experimentally infected with E. canis, but were not treated for the infection. FIG. 8 demonstrates that the level of antibodies that bind to SEQ ID NO:23 increased considerably after experimental infection and did not decrease during the time course of the experiment. The EDTx-1, EDTx-2, EDTx-3, EDTx-4, EDTx-5, and EDTx-6 dogs were experimentally infected with E. canis and then treated with doxycycline at 28 days-post infection. FIG. 8 demonstrates that the level of antibodies that bind to SEQ ID NO:23 increased considerably after experimental infection and decreased after administration of doxycycline. Therefore, SEQ ID NO:23 can be used to monitor the progression, the response to treatment, or the efficacy of treatment of E. canis infection.

Example 16 Differentiation of Dogs that have been Vaccinated for E. canis and Dogs that have been Vaccinated for E. canis, but have Become Infected with E. canis

Vaccines may not be completely effective at preventing infection. Therefore, it is desirable to have a method to determine if a vaccinated animal has become infected despite the vaccination. Immunoassays using p16 as a detection agent do not detect anti-E. canis antibodies in dogs that have been vaccinated for E. canis and that are not infected with E. canis. It has now been discovered that an E. canis p16 protein (SEQ ID NO:10) can be used to detect E. canis infection in dogs that have received an E. canis vaccine.

Six dogs that had been vaccinated for E. canis and two unvaccinated dogs were challenged with E. canis infected K9 cells in 10% DMSO. Each dog was tested over time for anti-E. canis antibodies with an immunoassay comprising SEQ ID NO:10. All of the vaccinated dogs and the two control dogs became infected with E. canis. The E. canis infections were confirmed with two independent infection markers. The immunoassays were able to detect the E. canis infection in the vaccinated and non-vaccinated dogs. All of the immunoassay signals were significantly above background signals. See FIGS. 9A-B, 10A-C, and 11A-C.

Sequences:

SEQ ID NO: 1 120kDa Antigen Nucleotide Sequence ORIGIN    1 ATGGATATTG ATAACAATAA TGTGACTACA TCAAGTACGC AAGATAAAAG TGGGAATTTA   61 ATGGAAGTGA TTATGCGTAT ATTAAATTTT GGTAATAATT CAGATGAGAA AGTAAGCAAT  121 GAAGACACTA AAGTTCTTGT AGAGAGTTTA CAACCTGCTG TGAATGACAA TGTAGGAAAT  181 CCATCAAGTG AAGTTGGTAA AGAAGAAAAT GCTCCTGAAG TTAAAGCGGA AGATTTGCAA  241 CCTGCTGTAG ATGGTAGTGT AGAACATTCA TCAAGTGAAG TTGGGAAAAA AGTATCTGAA  301 ACTAGTAAAG AGGAAAGTAC TCCTGAAGTT AAAGCAGAAG ATTTGCAACC TGCTGTAGAT  361 GGTAGTATAG AACATTCATC AAGTGAAGTT GGAGAAAAAG TATCTAAAAC TAGTAAAGAG  421 GAAAGTACTC CTGAAGTTAA AGCAGAAGAT TTGCAACCTG CTGTAGATGA TAGTGTGGAA  481 CATTCATCAA GTGAAGTTGG AGAAAAAGTA TCTGAAACTA GTAAAGAGGA AAATACTCCT  541 GAAGTTAAAG CAGAAGATTT GCAACCTGCT GTAGATGGTA GTATAGAACA TTCATCAAGT  601 GAAGTTGGAG AAAAAGTATC TAAAACTAGT AAAGAGGAAA GTACTCCTGA AGTTAAAGCA  661 GAAGATTTGC AACCTGCTGT AGATGATAGT GTGGAACATT CATCAAGTGA AGTTGGAGAA  721 AAAGTATCTG AAACTAGTAA AGAGGAAAAT ACTCCTGAAG TTAAAGCAGA AGATTTGCAA  781 CCTGCTGTAG ATGGTAGTGT GGAACATTCA TCAAGTGAAG TTGGAGAAAA AGTATCTAAA  841 ACTAGTAAAG AGGAAAGTAC TCCTGAAGTT AAAGCAGAAG ATTTGCAACC TGCTGTAGAT  901 GATAGTGTGG AACATTCATC AAGTGAAGTT GGAGAAAAAG TATCTGAAAC TAGTAAAGAG  961 GAAAATACTC CTGAAGTTAG AGCAGAAGAT TTGCAACCTG CTGTAGATGG TAGTGTAGAA 1021 CATTCATCAA GTGAAGTTGG AGAAAAAGTA TCTGAAACTA GTAAAGAGGA AAGTACTCCT 1081 GAAGTTAAAG CAGAAGATTT GCAACCTGCT GTAGATAGTA GTATAGAACA TTCATCAAGT 1141 GAAGTTGGGA AAAAAGTATC TGAAACTAGT AAAGAGGAAA GTACTCCTGA AGTTAAAGCA 1201 GAAGATTTGC AACCTGCTGT AGATGGTAGT GTAGAACATT CATCAAGTGA AGTTGGAGAA 1261 AAAGTATCTG AAACTAGTAA AGAGGAAAAT ACTCCTGAAG TTAAAGCAGA AGATTTGCAA 1321 CCTGCTGTAG ATGGTAGTGT AGAACATTCA TCAAGTGAAG TTGGAGAAAA AGTATCTGAA 1381 ACTAGTAAAG AGGAAAATAC TCCTGAAGTT AAAGCGGAAG ATTTGCAACC TGCTGTAGAT 1441 GGTAGTGTAG AACATTCATC AAGTGAAGTT GGAGAAAAAG TATCTGAAAC TAGTAAAGAA 1501 GAAAGTACTC CTGAAGTTAA AGCAGAAGAT TTGCAACCTG CTGTAGATGA TAGTGTAGAA 1561 CATTCATCAA GTGAAGTTGG AGAAAAAGTA TCTGAAACTA GTAAAGAAGA AAGTACTCCT 1621 GAAGTTAAAG CGGAAGATTT GCAACCTGCT GTAGATGGTA GTGTGGAACA TTCATCAAGT 1681 GAAGTTGGAG AAAAAGTATC TGAGACTAGT AAAGAGGAAA GTACTCCTGA AGTTAAAGCG 1741 GAAGTACAGC CTGTTGCAGA TGGTAATCCT GTTCCTTTAA ATCCTATGCC TTCAATTGAT 1801 AATATTGATA CTAATATAAT ATTCCATTAC CATAAAGACT GTAAAAAAGG TTCAGCTGTA 1861 GGAACAGATG AAATGTGTTG TCCTGTATCA GAATTAATGG CTGGGGAACA TGTTCATATG 1921 TATGGAATTT ATGTCTATAG AGTTCAATCA GTAAAGGATT TAAGTGGTGT ATTTAATATA 1981 GATCATTCTA CATGTGATTG TAATTTAGAT GTTTATTTTG TAGGATACAA TTCTTTTACT 2041 AACAAAGAAA CAGTTGATTT AATATAA SEQ ID NO: 2 120kDa Antigen Protein Sequence ORIGIN    1 MDIDNNNVTT SSTQDKSGNL MEVIMRILNF GNNSDEKVSN EDTKVLVESL QPAVNDNVGN   61 PSSEVGKEEN APEVKAEDLQ PAVDGSVEHS SSEVGKKVSE TSKEESTPEV KAEDLQPAVD  121 GSIEHSSSEV GEKVSKTSKE ESTPEVKAED LQPAVDDSVE HSSSEVGEKV SETSKEENTP  181 EVKAEDLQPA VDGSIEHSSS EVGEKVSKTS KEESTPEVKA EDLQPAVDDS VEHSSSEVGE  241 KVSETSKEEN TPEVKAEDLQ PAVDGSVEHS SSEVGEKVSK TSKEESTPEV KAEDLQPAVD  301 DSVEHSSSEV GEKVSETSKE ENTPEVRAED LQPAVDGSVE HSSSEVGEKV SETSKEESTP  361 EVKAEDLQPA VDSSIEHSSS EVGKKVSETS KEESTPEVKA EDLQPAVDGS VEHSSSEVGE  421 KVSETSKEEN TPEVKAEDLQ PAVDGSVEHS SSEVGEKVSE TSKEENTPEV KAEDLQPAVD  481 GSVEHSSSEV GEKVSETSKE ESTPEVKAED LQPAVDDSVE HSSSEVGEKV SETSKEESTP  541 EVKAEDLQPA VDGSVEHSSS EVGEKVSETS KEESTPEVKA EVQPVADGNP VELNEMESID  601 NIDTNIIFHY HKDCKKGSAV GTDEMCCPVS ELMAGEHVHM YGIYVYRVQS VKDLSGVFNI  661 DHSTCDCNLD VYFVGYNSFT NKETVDLI. SEQ ID NO 3 200kDa Antigen nucleotide sequence from 1081 to end ORIGIN    1  AATTTAGAT TTTGGACTTG TAGATGGAGA TGGTAAAAAT CCTTTACATC ATGCTGTTGA   61 ACATTTGCCA CCTGTTATAC TTAAGGGCGT AATGGACCAT GTAAAAAATA GTAGTGAGTT  121 TCAAGATTTA GTAAATGATC CTGATTATTT TGGAAATACT ATAGCTCATT ATGCAGTTAA  181 GAATAAAAAT GCTGATTTAA CATTGTTTAA CATGCTGAAA GCTTCAGGAG CTGATTTAAA  241 TGTTAGGAAT GTAGTTGGTC GAGCTCCAAT ACATGTTGCT TCTTCTAATG GTAAGGCTAA  301 TGCAGTTTCT GGACTTGTAT CATGTGGTAT TGACGTTAAT TCTCAAGATG TGAATGGAGA  361 TACACCACTT CATATTGCTG TTGAAGGCGG TAGTATGGAG ACGGTATTAG CAGTGTTAAA  421 TCAGAGAGGT GCTGATGTTA GTGTCCAGAA TAACGATGGA GTTACACCTA TGCTTAGTGC  481 TGCTAAATAT GGAGATATAG GTGTAATAAA AGCTTTAGGT TCAGCTAAAC CAAATATTAA  541 AGGTGAAGAC ACTGTTGCTA AATCATTGCT GATGGAGGAT TACAAAGGTT TTACACCCTT  601 GCATTTTGTA GCTGGTGGTG GTAGCAGAGA TACATTCCGT GTCGTAAGAA AAAATTATGA  661 AAAATGTCAT GACTTAGCTA CTATTAGGGC AGCTTTAATG CAAGATAGAA GTGGTGGTGA  721 GCTTGTAAAT TTAGGGGATT TTGAAAGTGA AAATATATTG GGTTCGCCAA ATGCAAAATT  781 CTTGCAGCAT ATTCAATCAG CAAATTTTGG TTTTTCTCCA GCGCATTGTG CTATAGTATC  841 GTCTAATCAC AATGTAATGA AAGATATCTT AAATTTTGTT GGGGATTCGT TACACCTACC  901 AAGTGAGCGT GGGTATAATG CAATGCAGGT TGCTGCTTTG TTTGGTGACA AAGAAGCAGT  961 GAAAATGCTT GCTAAAAGTG CTAAGCCAAG TGATCTTAAT TTTAAGACTT CAGCAACTCC 1021 TACTCCGTTA AATCTTGCAT GTCTTAGAGG TGATAATGAG GTAGTACGTG GGTTAGTAGG 1081 TCAACATGGT ATTGACATTA ACCAACGTAT GGGAAGTGAT AAAAACACTG TATTGCATTA 1141 TGCAATCAGC AAAGGAGATA GTTTTCTTGT GCAAAAGATA TTAGCTCATA CTGGAGTTGA 1201 TGTTAATTGT GAGAATAACC TAGGTCAAAC GCCTTTACAT TTAGCAGTTG AGGGAGGAGA 1261 TCCTAAGATA GTATCTTCTC TTCTTAAAGC TGGTGCAGTA GTTAATCGTC TGGATGATAA 1321 TGGTAGATCT GTACTTTCTT CTGCGATAGT TCCAGGTAGA AAAGAAAAGG GAGTGCTGGG 1381 TATAGTTAAT AAATTGCTGG ATAGAGGTGC AGATATTAAT TTAGATGGAG ACCACAATAT 1441 ACTTTTTGAT CAGTGTCTAA GGGGTGGATA TAATAATGTA TTAGATAAGT TAATACAACA 1501 AGGGGTTGAA GTTAATCGAA ATAGTGAAAT ACGTCCAATG GTTTATGCTG CAATATCTGG 1561 TAATGAGCAT GCTATCAAAT CATTAGCTAA TGCTGGTGGA GATGTTAATG AAGTAGTAAA 1621 TAATCCATCT AGTAGGCATT CAGGAAATCC TTTAATTATG GTTGCAGTAG CAGATGGTAA 1681 TGCAGGTCTT CTTAAAACAT TAGTTTCTGA AGGATGTGAT GTTGGTAAAT CTGGAAAAGA 1741 TGGTAATACA GCGTTACATT ATGCTGTTAG TCATTCAGAT AAAGAGTTTG GTAATAAAGC 1801 TATAAAGATA TTAATTTCAC GTAATAGTGT TGGGACTAAT AGAGATATTC TTACTCAAAA 1861 GAATAACGCA GGTGATACAC CTTTACATGA AGCTCTTAAG TCAGGTAATA TTAATTCTGT 1921 ACAGAATATC TTAAGTGCTG TACATCCAAG ATACGCAAAG GAGATATTAA CAGCCAGAGA 1981 CAAAGAAGGG TACACACCAA TGCATTATAC TGTTGGAGTA AATAATGTTG ATGTTGGTAG 2041 AAGTATTCTA GAGTCTATGC TCTCTAAAGG TGTGAATAAT CTTGGAGAGA TTGTTGGAGC 2101 ACAGGATAGT AATTTTCGAA CACCTCTGCA TGCTGCTATT AAAATATCTG ATTATCGTGC 2161 TGCGGACATG ATAATAGGTA GCTTATCGAA AACAGAATTG TCAAAGTTAT CGCAATTAAC 2221 AGATATTAAC GGGGATACAC CACTACATCT TTCTTGTCAG TCTGGTAATG TCGAGATGAC 2281 ACAATTCTTT CTTGGAGGTT TGGATAAACG TGAATTACCT AAGACATTAA AGATAGCAAA 2341 TAAAAATGGA GATACTCCTT TACATGATGC TATAAGAAAT GATGATATTA AATCTGCAAA 2401 AATGATGATT AGGAATTGTA ACAAAGAAGA ACTTGCTAAT GTATTAAAAT GTAAAGATAG 2461 TTTTGGTAAT ACAGTATTGC ATACTATTGC TGACCAAGTT ATTGCGAATC CAGAATCAAA 2521 GAAAGACCTT GATGGTTTGA TGAATTTAGC AGTGAAAAGG CTAAAGAATC AAGATCTGAA 2581 AGATCTAGTT AATACGCGAA ATAACTCTGA CGATACTGTT GCACATTGTG CTCTTTTATC 2641 GGATATGAAA TATGCTCAAA AGATACTTAA ATCATGTAAC CATGATACAT TAGTGAGAGG 2701 AAATAGTAAT AATCAATCTT TATCAGAGTG TATTCGTGAT GATAGTAAAT ATAAAAAAGG 2761 TGGAATTTTT AGTAAGTCTT TATTTTCAAA ATTAAAGAAA CTTGAGGCAC GAGCTGCCAG 2821 CGCTAGTTAT GAAGAATTAT CTAGTATCAG TAGTGGTAGT GATGTTTCTT CTGTATCAAC 2881 AAATAGCACA GAAGTAAGTG CAGTACCTGA AGTGGCAAGA AGTAGTGGTG CTGTGTCGTT 2941 CAAACATGTG CAAGAAACAG GAGTTGACAC GTCTGGTCCT TCTGATATAG AAAGTTTAGA 3001 GAGATTATCT GATACTAGTC TTGGGTCAAA TGATTTTGAT CAGCGAATGG CAGATTTAGA 3061 TCAAGAAATA GCAAATATTG TTAGTGGTTT ACCAGAAGTT ACCCAGGTAG CTGTAAGTCA 3121 ACAACAAGCA GCATCTCCTA GTTCAGGTCA AGCTGCTGGT GTGCAACAAA AAGAGATGCA 3181 GAGATAA SEQ ID NO: 4 200kDa Antigen Partial Protein Sequence ORIGIN    1 NLDFGLVDGD GKNPLHHAVE HLPPVILKGV MDHVKNSSEF QDLVNDPDYF GNTIAHYAVK   61 NKNADLTLFN MLKASGADLN VRNVVGRAPI HVASSNGKAN AVSGLVSCGI DVNSQDVNGD  121 TPLHIAVEGG SMETVLAVLN QRGADVSVQN NDGVTPMLSA AKYGDIGVIK ALGSAKPNIK  181 GEDTVAKSLL MEDYKGFTPL HFVAGGGSRD TFRVVRKNYE KCHDLATIRA ALMQDRSGGE  241 LVNLGDFESE NILGSPNAKF LQHIQSANFG FSPAHCAIVS SNHNVMKDIL NFVGDSLHLP  301 SERGYNAMQV AALFGDKEAV KMLAKSAKPS DLNFKTSATP TPLNLACLRG DNEVVRGLVG  361 QHGIDINQRM GSDKNTVLHY AISKGDSFLV QKILAHTGVD VNCENNLGQT PLHLAVEGGD  421 PKIVSSLLKA GAVVNRLDDN GRSVLSSAIV PGRKEKGVLG IVNKLLDRGA DINLDGDHNI  481 LFDQCLRGGY NNVLDKLIQQ GVEVNRNSEI RPMVYAAISG NEHAIKSLAN AGGDVNEVVN  541 NPSSRHSGNP LIMVAVADGN AGLLKTLVSE GCDVGKSGKD GNTALHYAVS HSDKEFGNKA  601 IKILISRNSV GTNRDILTQK NNAGDTPLHE ALKSGNINSV QNILSAVHPR YAKEILTARD  661 KEGYTPMHYT VGVNNVDVGR SILESMLSKG VNNLGEIVGA QDSNFRTPLH AAIKISDYRA  721 ADMIIGSLSK TELSKLSQLT DINGDTPLHL SCQSGNVEMT QFFLGGLDKR ELPKTLKIAN  781 KNGDTPLHDA IRNDDIKSAK MMIRNCNKEE LANVLKCKDS FGNTVLHTIA DQVIANPESK  841 KDLDGLMNLA VKRLKNQDLK DLVNTRNNSD DTVAHCALLS DMKYAQKILK SCNHDTLVRG  901 NSNNQSLSEC IRDDSKYKKG GIFSKSLFSK LKKLEARAAS ASYEELSSIS SGSDVSSVST  961 NSTEVSAVPE VARSSGAVSF KHVQETGVDT SGPSDIESLE RLSDTSLGSN DFDQRMADLD 1021 QEIANIVSGL PEVTQVAVSQ QQAASPSSGQ AAGVQQKEMQ R. SEQ ID NO: 5 ATPase - Clone 84 Fragment Nucleotide Sequence ORIGIN    1 AATTATGCTG AAACTACTTT ATCATTTGGT GAATCTCGAG CAGAAGGACG TGAATCTCCA   61 TCAAGTGCAT TTGTTCAAAC TGGTCAATCA GAAGTACCTC GGAGTGAGGC TGCAGAGCCA  121 TTAATTCAAT TTCCTCATGA TGAAGAAAGT ACTGCATTAG GTTCTCAAGC AACTATGACA  181 GGAGTGTCTA CTCAGGCTAG TCCGTCAGCA GCATATCAGG ATGATAGTGA AATATCACGT  241 ATGAGGTCTA TGGCAGGAAC ATCTGCTCAA GCTGATCAAT CAGCAGTACA TCGTCGGAGT  301 GGTACAGCAT TAGAGCCATT AATTGAATTG CCTGATGAAG AAGAAAATGC TGCATTAGAT  361 TTTCAAACAG CTATGACAGG AGTGCCTACT CAGGCTAGTC CGTCAGCAGT ACATCGGAGT  421 GGTGTTGCAT CAGATCCTAC GCTACCTGAT GATGAAAGAA TTGATGTTCC ATCAGTTTCA  481 TCTCAAGTTG TAAGACCTTT TAGTGATGGT GAAGATTATT CAGTATATGA TAAATCAGGT  541 GTAGTAAGTG GTCATGAAAG ACCTGTTTCT TCTAGAGATT CAAGACAATT GGATGCATTT  601 GGTGATCCAT CAGATGATTT ATTGCCGGAG AGTGAAATTA TTGTTAGCAG CAGTAAGAAA  661 GCAATATTAG ATAGCCAAAA TGAAATAGAA TCTCTTATTC AGAGTGGAGA TACTTCTAGA  721 TGTATTAGGG CAATTAATAG TGCTCCTAGT GCGTCAGTGT TTCAACTGAA GACTTTATCG  781 AATGATATAT CTATTGCTGG ACGTGCTTTT TTAAATGGTA ATATTGATTT AATAGAAGCT  841 TGTATGAATT CTGGCAAGAA ATTAAATCCA AATATTACTG ATAATGAAAA AAATACTCTA  901 TTACATCAAT TTGTAGGATA TTTTGAACGC GATCCGAGAA TGTTGCTTGA TGCAGGAATG  961 CGTAATCTGT TTTTGAGATT ATGCATGGAT TATGGTTTCG ATATTAATCA TAAAAATAGT 1021 AATGGTAATA CAGTACTTGA TAGATTAAAT GATTTAGTAG AAGGGTTAAG TAGTTCGCAA 1081 GTTGATCTTG AAAGTAGTGG TATTGATGAG TTTATGATCT CATTGTTAGC TCATTCTAGA 1141 ATGAGTGATC AAGCAGTAAA GAATATTGCT ACTGCGCAAA ATGAGTTTTT TGCACGTGAT 1201 TCTGTTTATA ATATTAGTCG TTTAGTTGAT ACTTCTATAG TTTTGCAGAA TAAATTCAGT 1261 GAAGTATTTT ATGAAGTCTG TGGACGTATT TTATCTGAAG AAGCTGGTAA ACATAAGGGT 1321 GTTGCTGAAG CAAATTATTC AAGATTGAAT AAAATATTAA ATGATGAATG TCTTAGAAAG 1381 ACTTTAGCTA ATACAGATGC CGATGGAAAT AATGTTTTAC AGAGATTGTG TCAAGATATT 1441 GCTTCTGGAA AAATCAATGC TCGTGATGAC AGAGTATTAA AACTTTTTGA GACAATTATA 1501 TCTAATTTAA AAGACAAAGA TAAAGCATTA CTAGAGGATT TATTATTTAA TAATAGAAAC 1561 TCAAGATTTG AAAATTGCAT TGAAGCTATA CCACGTATTC CTGGTGCCGA TGCTCTATTT 1621 AAAAAACTAG AAGAGTTATT ATTAAAAAAG AAAATAGCAG AGTCTTGTGA TTTTAATTCT 1681 ATGTTAGTGA ATTGTGCTGA GTCTGCTAAT GATAATTTAT ATAATTACCT GCGCACTAAT 1741 TATGCAGTTA TTGGTATAAA TAACGTAGAT ATAAATGGCA ATTCATCCCT ATGTAAAGCT 1801 GTTGTTACTG GGTCACAAGG TATTGTTAAA GCAGTATTAT CAACTGGAAC TAATATTAAT 1861 AGGAAAGATA AAAATGGTAA TACACCTTTA CATGCATTGT TAATTTTTAT GATGTCTAAC 1921 CCTGAACTTG TCAAGGAGCA ACATATTTCA CTTGTGAAAT TCTTAGCGTC TCGTGGAGCT 1981 TTACTTAATG TAAAAAATAA TATGAATATT TCTCCAATTA TGCTTGCAGA ATCTATTGAT 2041 AAGAAAGAGG AACTTGCTAA GAAATTTACA AATCAAAAAG TTAGTATTTT AGAATCTTTA 2101 ATAGCTGGTA GTGAAGAACA TTTAGGGCTT AAATCCAAAT GTATATCTGA GTTAAAGCCT 2161 TATATAGAAT TAGGAAAAGG CATGAAGTAC GAAGATATAC ATGCTGATGT AATAGGTGGT 2221 GTATTATCTG CTGATATGTG TAATGCTAGA TTGCAGATAG GTAAATTATT AAATGGTGAT 2281 TTTTGTAAAG AAAATGAATT AAAGACAGTA AAATTTAATT TTTCTGATAC AAATAAGGGT 2341 TATGTACAAA ATGTTGGTAA AAAAAGAAAT TAT SEQ ID NO: 6 ATPase - Clone 84 Fragment Protein Sequence ORIGIN    1 NYAETTLSFG ESRAEGRESP SSAFVQTGQS EVPRSEAAEP LIQFPHDEES TALGSQATMT   61 GVSTQASPSA AYQDDSEISR MRSMAGTSAQ ADQSAVHRRS GTALEPLIEL PDEEENAALD  121 FQTAMTGVPT QASPSAVHRS GVASDPTLPD DERIDVPSVS SQVVRPFSDG EDYSVYDKSG  181 VVSGHERPVS SRDSRQLDAF GDPSDDLLPE SEIIVSSSKK AILDSQNEIE SLIQSGDTSR  241 CIRAINSAPS ASVFQLKTLS NDISIAGRAF LNGNIDLIEA CMNSGKKLNP NITDNEKNTL  301 LHQFVGYFER DPRMLLDAGM RNLFLRLCMD YGFDINHKNS NGNTVLDRLN DLVEGLSSSQ  361 VDLESSGIDE FMISLLAHSR MSDQAVKNIA TAQNEFFARD SVYNISRLVD TSIVLQNKFS  421 EVFYEVCGRI LSEEAGKHKG VAEANYSRLN KILNDECLRK TLANTDADGN NVLQRLCQDI  481 ASGKINARDD RVLKLFETII SNLKDKDKAL LEDLLFNNRN SRFENCIEAI PRIPGADALF  541 KKLEELLLKK KIAESCDFNS MLVNCAESAN DNLYNYLRTN YAVIGINNVD INGNSSLCKA  601 VVTGSQGIVK AVLSTGTNIN RKDKNGNTPL HALLIFMMSN PELVKEQHIS LVKFLASRGA  661 LLNVKNNMNI SPIMLAESID KKEELAKKFT NQKVSILESL IAGSEEHLGL KSKCISELKP  721 YIELGKGMKY EDIHADVIGG VLSADMCNAR LQIGKLLNGD FCKENELKTV KFNFSDTNKG  781 YVQNVGKKRN Y SEQ ID NO: 7 ATPase - Clone 7 Fragment Nucleotide Sequence ORIGIN    1 GTAAAAAAAT TAAGATTATT ATTAAATTCA ATAAGTGAGT TACCGCAAGA ATTAAAAGAT   61 CAAATTTTAA GTACTAGAAG TACTATAGAT AAATTACGAA ATAGAATTAA TGCCTGCATA  121 AAGTCTGACG ATAGAGAAGG TATTGCACAT GCTGTAGAAT CTATGGCTAG TTCTTATTGT  181 GAATTATTAG GACATTGTAG ATTAATTTTT AAGAAATTAT ATGATGAAAA TGCTGATAAA  241 AGTTTGCTAG AATTATGTAT TAAAGAATAT CAATCTGATT TAAACAAATT ATTGGAACAA  301 GGTATTGATA TATGTGCTTC AGAAGTCTCA TCAGAATGTA AGGATTTAGT TTGTAAAGTA  361 TGTGAAGATG AATTTGAGAA ATATGACTCT TTATCTAAAG TACAAAGATT CAGGGAATTA  421 TCTGGTGAAA TTGCTGATTT GGATGATAAA TTAACAAGAA GGGCTTCTTT TGTTGAGACT  481 TTTGGATTAT TTAGCAGTAG ATTAAGACAT TATAGGGAAA TTTTAGGAGA TGGTGATTTA  541 AAATTTCGAG AGAGGATAGT TGAAAAATAT CAAGAGGATT TAAAGGAATT ATTAGAATTA  601 TCTGTTGATC TTCATTTGTT AATAAATTTA CCAGCATTAG AAGATTTACG CGATCATAGA  661 AATTTAGTGC ATAGAGCATG TAATGCTGAA ATTGAAAAAT ATCTAACTTT ATTTGATGAT  721 CAACAATTAC GTACATTATC GCAAGAAGTG AATAATGCTC ATGGTGAATT GATACAGATG  781 TTTTCTAAGT TTAGTATATT TGTTGATGGC GTTACTGGTA TTGAACAGAG CACATCTCAA  841 GTAGAGCACC CTCGTTCTGA TATTGCTAAA AGAGATACTA CAACACCAAA GCAACGTGTT  901 GTGCAAGGTA AAGATGATAT ACAATCTAGT GATAGTGATA GTGATAGTGA TAGTAAATAC  961 GGTGATGATG ATAGTAAAAA AGCATCAGTT AGTGCACCTG CTGTTGACCA AGTTGTACCT 1021 GTAGCTGATG TTCAACCTGA ACCTCAGCTA GGTGAAGGAT TGGAAACATT AGAGTCTAGT 1081 ATAGCTGAAG GACCTGAGTT GCCTGGTGAT GCATCTACTG CTAAGCAATC TATACCTTTT 1141 GCGATAACAC CATCAAGTCC TGAGACAGTT GATGAAAAAC TTGAAAGTTC TGGTGTTAGT 1201 CAAGATGGTA TTACAACACC AGGACAACGT GTTGTGCAAG GTAAAGATGA TATACAATCT 1261 AGTGATAGTG ATAGTGATAG TAAATACGGT GATGATGATA GTAAAAAAGC ATCAGCTAGT 1321 GCACCTGCTG TTGACCAAGT TGTACCTGTA GCTGATGTTC AACCTGAACC TCAGCTAGGT 1381 GAAAAATTGG AAACATTAGA GTCTAGTATA ACTAAAGGAC CTGAGTTGCC TGGTGATGCA 1441 TCTACTGCTA AGCAATCTAT ACCTTTTGCG ATAACACCAT CAAGTCCTGA GACAGTTGAT 1501 GAAAAACTTG AAAGTTCTGG TGTTAGTCAA GATGGTATTA CAACACCAGG ACAACGTGTT 1561 GTGCAAGGTA AAGATGATAT ACAATCTAGT GATAGTGATA GTGATAGTAA ATACGGTGAT 1621 GATGATAGTA AAAAAGCATC AGCTAGTGCA CCTGCTGTTG ACCAAGTTGT ACCTTCTGAC 1681 ACTCGTGCAG ATGGAGTATC AGAACCATTA GCATCTCATG TGGATCAAGG ATCTGATGTA 1741 CCTGGTGATG CATCTGTTGA TGGTGTTGAT TTAAGATTAG GACGGTTATC TACTGAGCAA 1801 AGTGGATTGT TGCCACGTCA TGAACAAAAT GTAAGAGCAT TTATTTTAGA ACAGAGTTTG 1861 TTAGATCAAT TATATATGGA CTATATAGAT TTACACCCTG ATCAGAAAAG TTGTGAAGCT 1921 TATAATTCAG CATTGCATGG ATATAATACA AGATTAGAGT TACAGAAGGA ATATAACAGG 1981 ATTTTTGAAT CACATGAATC AGCATCTCCA AATGAAATTA ATAGTTTTTC ACAAAAATAT 2041 AGAGCAGCAT TAAGAGATGT TGCGCAGGAT ATTGTTAATC AGGGTCCAAT GTTTTATTCT 2101 TCTAGAGATG CAATGCTATT AAGGGCTAGA GTAGACACAT TGTGTGATAT GTGTCGTTCA 2161 ATACGTAATC TGTATATGGT TGAATTAGAT GCCATAGATA AAGAAGAAAA ATCGTTACAA 2221 TCTGATATGA AATCTGCAAG TTCTAGTGAT AAAAAGTTGA TACAAGAAAA AATAAAATTA 2281 CTT SEQ ID NO:8 ATPase - Clone 7 Fragment Protein Sequence ORIGIN    1 VKKLRLLLNS ISELPQELKD QILSTRSTID KLRNRINACI KSDDREGIAH AVESMASSYC   61 ELLGHCRLIF KKLYDENADK SLLELCIKEY QSDLNKLLEQ GIDICASEVS SECKDLVCKV  121 CEDEFEKYDS LSKVQRFREL SGEIADLDDK LTRRASFVET FGLFSSRLRH YREILGDGDL  181 KFRERIVEKY QEDLKELLEL SVDLHLLINL PALEDLRDHR NLVHRACNAE IEKYLTLFDD  241 QQLRTLSQEV NNAHGELIQM FSKFSIFVDG VTGIEQSTSQ VEHPRSDIAK RDTTTPKQRV  301 VQGKDDIQSS DSDSDSDSKY GDDDSKKASV SAPAVDQVVP VADVQPEPQL GEGLETLESS  361 IAEGPELPGD ASTAKQSIPF AITPSSPETV DEKLESSGVS QDGITTPGQR VVQGKDDIQS  421 SDSDSDSKYG DDDSKKASAS APAVDQVVPV ADVQPEPQLG EKLETLESSI TKGPELPGDA  481 STAKQSIPFA ITPSSPETVD EKLESSGVSQ DGITTPGQRV VQGKDDIQSS DSDSDSKYGD  541 DDSKKASASA PAVDQVVPSD TRADGVSEPL ASHVDQGSDV PGDASVDGVD LRLGRLSTEQ  601 SGLLPRHEQN VRAFILEQSL LDQLYMDYID LHPDQKSCEA YNSALHGYNT RLELQKEYNR  661 IFESHESASP NEINSFSQKY RAALRDVAQD IVNQGPMFYS SRDAMLLRAR VDTLCDMCRS  721 IRNLYMVELD AIDKEEKSLQ SDMKSASSSD KKLIQEKIKL L SEQ ID NO: 9: p16 Antigen Nucleotide Sequence ORIGIN    1 ATGTTACACG TTCAAAATCA TGTTGATCAA CATACAAATC ATATAGAACA TGATGATTAC   61 CATTTTACTG GTCCTACTAG TTTTGAAGTT AATCTTTCTG AAGAAGAAAA AATGGAGTTA  121 CAAGAAGTAT CTTCTATTGA TAGTGTAGGA TGCGAAGATT GTGATCCAAA TTGTCGTTAT  181 CCTTTAGAAT TAGTAGAATG TCAGCGTATT GAGGAAAGAC CAGTATGCAA TGCAGGTTTA  241 GAGAGCTTGA CTGTTGATGC ATATCAATTA GGATTGTTGT TAGGTGGTTT TTTAAGTGCT  301 ATGAATTACA TATCTTATAG CTATCCTTGT TATTATTATG ATTGTTGTGA TAGAAATTAT  361 TACGACTGTT GTCATAAGAA TGCGTGTTAT TACAACTGTT GTGATTGTGC GTAA SEQ ID NO: 10 p16 Antigen Protein Sequence ORIGIN    1 MLHVQNHVDQ HTNHIEHDDY HFTGPTSFEV NLSEEEKMEL QEVSSIDSVG CEDCDPNCRY   61 PLELVECQRT EERPVCNAGL ESLTVDAYQL GLLLGGFLSA MNYTSYSYPC YYYDCCDRNY  121 YDCCHKNACY YNCCDCA. SEQ ID NO: 11 Ribosomal Protein L1 Nucleotide Sequence ORIGIN    1 ATGACGATTT TCTTAGAAAG TGATGATGAT AAGAGTAACT TTAAGAAGAC ATTGGAGAAC   61 GGTACTAAAG ACAAGACAAA TCTAGATAAT ACTTATTATG ACTATCATCA TGAAGATGAT  121 ATGGGAAATA CTGAATATCA TTATGTGAGT TTGGATAGAG TGGATCATGT TAAGATGCCT  181 GAAGAGCCTG TAGGTTATGG TGGAGATACT TTACCTATTG TTCCTACTAC AGCTGCTAGT  241 GTATCTGGTA GTGATGCAGG CGTTGCTGTA GGTAATGTTA AAGATTTTGA AGATAATGTT  301 TTTCATCATA CATCTACTAT AAGAAACGAT GAATTGAAGA TAGATTTACG AATACATACT  361 TTAAAGGATT TATCTGATAA AAGATTACGT GAAATTGAAA AGGGATTTAA TGATACGGTA  421 ACAAAATTTA AAAATAATTT TGGGTTAGAA CCAAATGATG GAGAAACTAT TTTTGATTTA  481 TACCTTTTTG ATGATAAGGA ACAATATAAT TATTATGGAA AGCTTTATAA CTTAGGAATT  541 AGTGGATCTG GAGGTATGAC TTTCTATGGA AATGCTAATG TTCCATATAA AATTTATGTA  601 CATCAATATG GTGAAATATT GAATTTAAAA CATGAATTAA CTCATGCATT AGAAAGTTAT  661 GCATCTGGAC ATAAATTGCA TGGTTCTGAC GTAAATAGCA GAATATTTAC GGAAGGATTA  721 GCTGATTATA TCCAAGAAGA TAATAGTTTT ATTATGAGAG GATTAAAGGA TCGAGAGATC  781 ACTTCAGATG TATTGAAAGA TTCTTCTGGT AATGTAGATC ATTTAAGTGG TGTTGCAGTG  841 AATGAAAATC AGAGGTTAAG TTATAGTATA GGACATGCAT TTGTAAGCTT TTTACAAGAG  901 AAATATCCTA AGTTAATTTC GGAATATTTA AACGCATTAA AAGAGGATAA TATTATTCGT  961 GCTAAAGAAA TAATTAGTAT GGATAAGTAT CCAGATTTTG AGCCGTGGGT GAAGTCTAAA 1021 GACATTAGTT TATATTTAGA AAATATGAAT GTATTAAAGT TAGGATTAGG TGAGAAAATG 1081 TTTTCTGCTG AAAGTGCTAG CTATTTTGAA GATCAAGGTG TCAATAAAGA ATATTACCAT 1141 GAAAATATTT ATGATATGAG TGGTAAACTA GTAGGTGAAA TGTCACCTGT AGTGCATTAT 1201 GCACAAAAAA ATGTGATTCG TATTTGGAAT ATTGCAAGTC CTGATATGAT AGAGGTGCGA 1261 CCAGAATATA ACTTTCTGAA ATTGGTAACT ACTCCATCTG GTAAGTCTGC ATATGTATAT 1321 TGTGATAAGA ATGGGCATGA GTATTTTAAT ACTAAAGATT ACATAGATTC TGCGTTTAAT 1381 ATATTGGCAA GATATGATGT TAAGCTTCGT GAAAGTAGTG ATGCTTTGGA TATTAGAGGT 1441 CGTTACTCAG ATGCTGCTAA AGTGTTTAGT AAGCTGCCTA ATGCGGATTT GCTGTTGGAT 1501 AAGTTTTTAG AAAAAATAGG TTATAGTAGT TATAAGCAGA TAATAATGAG TAATCCAGAA 1561 CAGCTTAATT CTATTAAGGC TTATGTAGTA AAAGAAGTGT TTGAAAATTT TAGGGAATCT 1621 GAGGTCAAAA AGGTGTTGAG TGGTGAGTCT CATCCGGAAG TAAGAAATGT ATTAATGGAT 1681 CTTACCTATG TTGATTTAAA GAGTGTTATA GGAGTAAATG GTGCAGATAT TGACAGTATT 1741 ATTTCTAATC CAGATGTAAT GTTGCGTACT GCTGTGTTAG GTAAAGGAAA TGCAAGTGGG 1801 ATATCTCTAT ATGTAGATGA TCAGAAAGTT GGTGAGCTGT CAACTGAAGC AGGTTATTGT 1861 GTTAAAAATC TTGATACTGG TAAAGTGTAT TTTATGTTCC ATAATGTTGT TGGAATGATA 1921 GCAAGTGGTT ATGAAGACAG AGCATATATG GTTGTATTAG AAAAAGATGG TAAGTTTACT 1981 ACTGCTCTAG TTAATAATAT ACAAAAAGCA GCAGATGGAA ATGTTGTATG GGATAATCAA 2041 TTTAATCATC CGAATATTAA TAACTTGCAC TCAAATTATA AGGAGCTGTT GTTAAATGAT 2101 GCTTCAGTTA AAGATTACTC TCATCTTGCG GATGTGAAAT TTAATAAAGA TGATACAGTA 2161 ATTGTTAAAG GTGAATTATT AGATGATAAA GGTACTGTAA GTGTAGATGA TGATGTACAT 2221 CGTGCAGTTG TTAAGCATGA TGATCAAATA CTACATCAGT TTAAGAGTAT GTCTTTTTAC 2281 ATTACTGAAC CATCAGCTGA TTCAGGTGAC AATTATGGAA GTGATTTTTT CATTTCTGAT 2341 GAAGGAAAAA ATCTTAGATT TCAACTTCCT AAAGCTATTA CGCATTTGAA ATTGGTTAAT 2401 GTTAATGGAA ATAATAAGTT GGTACCATGT ACTAAAGATG GGAATGAACA TCCTGAAGGT 2461 ATGCCATCTG ATTTAACGGA TGAATATAGA TATATAGATC CTATTTTTGC TCATACATTT 2521 GAGAAACAAA GTTATTCTAA AAATAGTATT AGTGTTGGGT TAGTGGACTT CAGTAAATAT 2581 AAAGAAGGAT CTATGTTTAA ATTACAGCAT TATTCTGATG ATTATCATAT TCATAAGGAT 2641 GAACAAGGTA ATGTTATTAG GCCTAATAAC AGATCTTACG TTACAAAAGT GGATTTAGTA 2701 TATGATGATA AAGTTATTGG GATGTTGTCT GATAGTATAA ATCAATTTCA GGGTGATATT 2761 TTCATTTCTG CAAGCCTTAA TTATAGCCAC AATGATTTTC TTTCATCTAA GTACTTTCAG 2821 AAAGTTAATA TTGAGGCGTT AGAAAATGGA ATATATAGTG GAAGATATGA TGTAGGAGAT 2881 GGTGACCAAA TAGCAGGTCT TAATACTGAT ACAGGTTATA GTGATAAAGC TATTTTTTAC 2941 TTTAAAAATG ATAGCGCATC TACTGATATG CCGGCTAGTG ATGTTACTAC TATTTTACCT 3001 TATATAAATG AGCTTTAA SEQ ID NO: 12 Ribosomal Protein L1 Protein Sequence ORIGIN    1 MTIFLESDDD KSNFKKTLEN GTKDKTNLDN TYYDYHHEDD MGNTEYHYVS LDRVDHVKMP   61 EEPVGYGGDT LPIVPTTAAS VSGSDAGVAV GNVKDFEDNV FHHTSTIRND ELKIDLRIHT  121 LKDLSDKRLR EIEKGFNDTV TKFKNNFGLE PNDGETIFDL YLFDDKEQYN YYGKLYNLGI  181 SGSGGMTFYG NANVPYKIYV HQYGEILNLK HELTRALESY ASGHKLHGSD VNSRIFTEGL  241 ADYIQEDNSF IMRGLKDREI TSDVLKDSSG NVDHLSGVAV NENQRLSYSI GHAFVSFLQE  301 KYPKLISEYL NALKEDNIIR AKEIISMDKY PDFEPWVKSK DISLYLENMN VLKLGLGEKM  361 FSAESASYFE DQGVNKEYYH ENIYDMSGKL VGEMSPVVHY AQKNVIRIWN IASPDMIEVR  421 PEYNFLKLVT TPSGKSAYVY CDKNGHEYFN TKDYIDSAFN ILARYDVKLR ESSDALDIRG  481 RYSDAAKVFS KLPNADLLLD KFLEKIGYSS YKQIIMSNPE QLNSIKAYVV KEVFENFRES  541 EVKKVLSGES HPEVRNVLMD LTYVDLKSVI GVNGADIDSI ISNPDVMLRT AVLGKGNASG  601 ISLYVDDQKV GELSTEAGYC VKNLDTGKVY FMFHNVVGMI ASGYEDRAYM VVLEKDGKFT  661 TALVNNIQKA ADGNVVWDNQ FNHPNINNLH SNYKELLLND ASVKDYSHLA DVKFNKDDTV  721 IVKGELLDDK GTVSVDDDVH RAVVKHDDQI LHQFKSMSFY ITEPSADSGD NYGSDFFISD  781 EGKNLRFQLP KAITHLKLVN VNGNNKLVPC TKDGNEHPEG MPSDLTDEYR YIDPIFAHTF  841 EKQSYSKNSI SVGLVDFSKY KEGSMFKLQH YSDDYHIHKD EQGNVIRPNN RSYVTKVDLV  901 YDDKVIGMLS DSINQFQGDI FISASLNYSH NDFLSSKYFQ KVNIEALENG IYSGRYDVGD  961 GDQIAGLNTD TGYSDKAIFY FKNDSASTDM PASDVTTILP YINEL. SEQ ID NO: 13 Type IV Secretory Protein VirD4 Nucleotide Sequence ORIGIN    1 ATGGATAGTA TAAGTGCAAA TCACATACGC AATATTTTAT TCCTTGTTTT AGGCGCATTT   61 TTTGGACTGG AATTTTGCTT TTATTTATCA GGTGTATTAT TCATCTTAAT GGTCTGGGGA  121 CCAAATTACC TAGATTTTAA TGCTATAAAT CCCAGTTTGA GTGATTTTCC AGACAGAATT  181 TGGCCAACTA TTTTTGACTA TGTACAACAT TGGTGGAAGA ACCCTTCTGC ATACGATGCA  241 GTTTTATTAC TTAAGCTAAT AACGTCATTA TGTACACCAG TAGGTATTCT AAGCATAGTA  301 TTATGGAACC TTAGAAATAT ATTATTCGAT TGGAGGCCAT TTAAGAAGAA AGAATCACTG  361 CATGGAGATT CAAGATGGGC AACAGAAAAA GATATTCGCA AAATAGGATT ACGTAGTAGA  421 AAAGGAATAT TATTAGGGAA AGACAAGAGA GGATATCTCA TTGCAGATGG ATATCAACAT  481 GCATTGTTAT TTGCACCAAC TGGATCCGGA AAAGGTGTAG GTTTTGTAAT ACCAAACTTA  541 TTATTCTGGG AAGATTCTGT AGTAGTACAC GATATAAAAT TAGAGAACTA TGATCTTACA  601 AGTGGGTGGA GAAAAAAAAG GGGACAAGAA GTTTTCGTGT GGAACCCAGC ACAACCTGAC  661 GGTATAAGTC ACTGTTACAA CCCATTAGAT TGGATAAGCT CTAAGCCTGG ACAAATGGTA  721 GATGATGTAC AAAAAATTGC CAATCTAATA ATGCCTGAAC AAGATTTTTG GTATAACGAA  781 GCACGTAGTT TATTTGTAGG AGTAGTATTA TACTTACTAG CAGTACCAGA AAAAGTAAAA  841 TCCTTTGGAG AAGTTGTAAG AACAATGCGC AGCGATGACG TAGTCTACAA CTTAGCAGTA  901 GTACTAGACA CAATAGGGAA AAAGATTCAC CCAGTTGCAT ACATGAATAT AGCTGCATTT  961 TTACAAAAAG CAGACAAAGA ACGCTCAGGT GTTGTATCAA CTATGAACTC ATCTTTAGAA 1021 TTATGGGCAA ACCCATTAAT AGATACAGCA ACAGCATCAA GTGATTTTAA TATTCAAGAA 1081 TTTAAAAGGA AAAAAGTAAC AGTATATGTT GGATTAACAC CAGATAATTT AACTCGTCTT 1141 AGACCTTTAA TGCAGGTATT TTATCAACAA GCTACAGAAT TTTTATGTAG AACTTTACCA 1201 TCAGATGATG AACCATATGG TGTACTGTTC TTAATGGATG AGTTTCCAAC ATTAGGAAAA 1261 ATGGAGCAAT TTCAAACAGG TATCGCATAT TTCCGTGGAT ATAGAGTTAG ACTATTTTTG 1321 ATTATTCAAG ATACTGAACA GCTTAAGGGT ATATATGAAG AAGCAGGAAT GAACTCATTC 1381 TTATCAAACT CTACTTATAG AATAACTTTT GCTGCAAATA ATATAGAAAC TGCAAATTTA 1441 ATATCACAGT TAATAGGAAA TAAAACTGTT AACCAAGAGT CTTTAAACAG ACCTAAATTT 1501 TTAGATTTGA ACCCTGCATC ACGTTCATTA CATATATCAG AAACACAAAG AGCTTTACTA 1561 TTACCTCAAG AAGTAATAAT GTTACCCAGA GATGAGCAAA TACTTTTAAT AGAATCTACT 1621 TATCCTATAA AATCAAAGAA AATAAAATAC TATGAAGACA AAAATTTTAC AAAAAAACTA 1681 TTAAAGAGTA CCTTTGTTCC AACTCAAGAG CCTTATGATC CCAACAAAAC AAAAACAGCA 1741 ACAAAAGAAA ACGAAGAACC TATGCCAAGT ATTGAAAGCG ATCTTCCTAA AAATACATCT 1801 GACAATACTG AAAACAATAT GGAAGATGGT GCAATGTACA GCAGCATAGA AGAAGATTAT 1861 GACGATGATG ATGATGATTT TAATTTTGAA GACTTAGATG AATATATGGA TGAAGAAGAA 1921 GATTATGATG ATGAAGAATA TGATGATATA GATTATGATG ATAATAACAA TAGTAATGAG 1981 GAGTATGAAG AAGATAATCC AGAAGAAGAT GACAATAGCA ATAATCTAGA CGATGAGGAA 2041 GAGGAAGAAG ATAATATTAT AGATTATGAA GATGAAGAAG AATATGATGA TAACATAGAC 2101 TACAAAGATG ATGACAATAA CTACAACAAA GATACCACTG ACGATCAAGA CTCAAAAAAA 2161 CATAATGAAT AG SEQ ID NO: 14 Type IV Secretory Protein VirD4 Protein Sequence ORIGIN    1 MDSISANHIR NILFLVLGAF FGLEFCFYLS GVLFILMVWG PNYLDFNAIN PSLSDFPDRI   61 WPTIFDYVQH WWKNPSAYDA VLLLKLITSL CTPVGILSIV LWNLRNILFD WRPFKKKESL  121 HGDSRWATEK DIRKIGLRSR KGILLGKDKR GYLIADGYQH ALLFAPTGSG KGVGFVIPNL  181 LFWEDSVVVH DIKLENYDLT SGWRKKRGQE VFVWNPAQPD GISHCYNPLD WISSKPGQMV  241 DDVQKIANLI MPEQDFWYNE ARSLFVGVVL YLLAVPEKVK SFGEVVRTMR SDDVVYNLAV  301 VLDTIGKKIH PVAYMNIAAF LQKADKERSG VVSTMNSSLE LWANPLIDTA TASSDFNIQE  361 FKRKKVTVYV GLTPDNLTRL RPLMQVFYQQ ATEFLCRTLP SDDEPYGVLF LMDEFPTLGK  421 MEQFQTGIAY FRGYRVRLFL IIQDTEQLKG IYEEAGMNSF LSNSTYRITF AANNIETANL  481 ISQLIGNKTV NQESLNRPKF LDLNPASRSL HISETQRALL LPQEVIMLPR DEQILLIEST  541 YPIKSKKIKY YEDKNFTKKL LKSTFVPTQE PYDPNKTKTA TKENEEPMPS IESDLPKNTS  601 DNTENNMEDG AMYSSIEEDY DDDDDDFNFE DLDEYMDEEE DYDDEEYDDI DYDDNNNSNE  661 EYEEDNPEED DNSNNLDDEE EEEDNIIDYE DEEEYDDNID YKDDDNNYNK DTTDDQDSKK  721 HNE. SEQ ID NO: 15 MDIDNNNVTTSSTQDKSGNLMEVIMRILNFGNNSD EKVSNEDTKVLVESLQPAVNDNVGNPSSEVGKEEN APEVKAEDLQPAVDGSVEHSSSEVGKKVSETSKEE STPEVKAEDLQPAVDGSIEHSSSEVGEKVSKTSKE ESTPEVKAEDLQPAVDDSVEHSSSEVGEKVSETSK EENTPEVKAEDLQPAVDGSIEHSSSEVGEKVSKTS KEESTPEVKAEDLQPAVDDSVEHSSSEVGEKVSET SKEENTPEVKAEDLQPAVDGSVEHSSSEVGEKVSK TSKEESTPEVKAEDLQPAVDDSVEHSSSEVGEKVS ETSKEENTPEVRAEDLQPAVDGSVEHSSSEVGEKV SETSKEESTPEVKAEDLQPAVDSSIEHSSSEVGKK VSETSKEESTPEVKAEDLQPAVDGSVEHSSSEVGE KVSETSKEENTPEVKAEDLQPAVDGSVEHSSSEVG EKVSETSKEENTPEVKAEDLQPAVDGSVEHSSSEV GEKVSETSKEESTPEVKAEDLQPAVDDSVEHSSSE VGEKVSETSKEESTPEVKAEDLQPAVDGSVEHSSS EVGEKVSETSKEESTPEVKAEVQPVADGNPVPLNP MPSIDNIDTNIIFHYHKDCKKGSAVGTDEMCCPVS ELMAGEHVHMYGIYVYRVQSVKDLSGVFNIDHSTC DCNLDVYFVGYNSFTNKETVDLI SEQ ID NO: 16 KEENAPEVKAEDLQPAVDGSVEHSSSEVGKKVSETS KEESTPEVKAEDLQPAVDGSIEHSSSEVGEKVSKTS KEESTPEVKAEDLQPAVDDSVEHSSSEVGEKVSETS KEENTPEVKAEDLQPAVDGSIEHSSSEVGEKVSKTS KEESTPEVKAEDLQPAVDDSVEHSSSEVGEKVSETS KEENTPEVKAEDLQPAVDGSVEHSSSEVGEKVSKTS KEESTPEVKAEDLQPAVDDSVEHSSSEVGEKVSETS KEENTPEVRAEDLQPAVDGSVEHSSSEVGEKVSETS KEESTPEVKAEDLQPAVDSSIEHSSSEVGKKVSETS KEESTPEVKAEDLQPAVDGSVEHSSSEVGEKVSETS KEENTPEVKAEDLQPAVDGSVEHSSSEVGEKVSETS KEENTPEVKAEDLQPAVDGSVEHSSSEVGEKVSETS KEESTPEVKAEDLQPAVDDSVEHSSSEVGEKVSETS KEESTPEVKAEDLQPAVDGSVEHSSSEVGEKVSETS KEESTPEVKAE SEQ ID NO: 18 E. canis P1401 (72, 89) CPEVKAEDLQPAVDGSVEH SEQ ID NO: 19 E. canis P1403 (64, 89) CEVGKEENAPEVKAEDLQPAVDGSVEH SEQ ID NO: 20 E. canis CKEESTPEVKAEDLQPAVDGSVEHSSSEVGKKVSETS SEQ ID NO: 21 XPEVKAEDLQPAVDGSVEHX, wherein X = 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 amino acids. SEQ ID NO: 22 CMLHVQNHVDQHTNHIEHDDYHFTGPT SEQ ID NO: 23 CTNHIEHDDYHFTGPTSFEVNLSFEEKMEL SEQ ID NO: 24 CTGPTSFEVNLSEEEKMELQEVSSIDS SEQ ID NO: 25 XMLXVQNHVDQHTNHIEHDDYHFTXPT Wherein the X at position 1 is C or is absent, the X at position 4 is H or Q and the X at position 25 is D or G. SEQ ID NO: 26 XTNHIEHDDYHFTXPTSFEVNLSEEEKMEL Wherein the X at position 1 is C or is absent and the X at position 14 is G or D. SEQ ID NO: 27 XTXPTSFEVNLSEEEKMELQEVSSIDS Wherein the X at position 1 is C or is absent, and the X at position 3 is G or D. SEQ ID NO: 28 XTNHIEHDDYHFTXPT Wherein the X at position 1 is C or is absent, and the X at position 14 is G or D. SEQ ID NO: 29 XIXPTSFEVNLSEEEKMEL Wherein the X at position 1 is C or is absent, and the X at position 3 is G or D. SEQ ID NO: 30 XTNHIEHDDYHFTXPTSFEVNLSEXEKMEL Wherein the X at position 1 is C or is absent, the X at position 14 is G or D, and the X at position 25 is E or G. SEQ ID NO: 31 XTXPTSFEVNLSEXEKMELQEVSSIDS Wherein the X at position 1 is C or is absent, the X at position 3 is G or D, the X at position 14 is E or G. SEQ ID NO: 32 XTXPTSFEVNLSEXEKMEL Wherein the X at position 1 is C or is absent, the X at position 3 is G or D, and the X at position 14 is G or F. SEQ ID NO: 33 XMLXVQNHVDQHTNHIEHDDYHFTXPTSFEVNLSEXEKMELQEVSSIDS Wherein the X at position 1 is absent or c, the X at position 4 is H or Q, the X at position 25 is D or G, and the X at position 36 is F or G.

Other embodiments of the invention provide the following polypeptides:

-   -   (a) SEQ ID NO:33, wherein the X at position 1 is absent or C,         the X at position 4 is H or Q, the X at position 25 is D or G,         and the X at position 36 is E or G;     -   (b) Amino acids 1-27 of SEQ ID NO:33, wherein the X at position         1 is C, the X at position 4 is H, the X at position 25 is D or         G;     -   (c) Amino acids 13-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G; and a C is         optionally present at the amino terminus;     -   (d) Amino acids 24-49 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (e) Amino acids 1-27 of SEQ ID NO:33, wherein the X at position         1 is C or absent, and wherein the X at position 25 is D or G;     -   (f) Amino acids 13-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (g) Amino acids 24-49 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (h) Amino acids 13-27 of SEQ ID NO:33, wherein the X at position         25 is D or G, and a C is optionally present at the amino         terminus;     -   (i) Amino acids 24-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (j) Amino acids 13-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (k) Amino acids 24-49 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus;     -   (l) Amino acids 24-41 of SEQ ID NO:33, wherein the X at position         25 is D or G, the X at position 36 is E or G, and a C is         optionally present at the amino terminus. 

1. A method of distinguishing between animals that have been (a) infected with Ehrlichia canis; and (b) animals that have not been infected with E. canis regardless of whether the animal has been vaccinated for E. canis, the method comprising: (a) contacting a biological sample from an animal with one or more purified polypeptides that do not specifically bind to antibodies that are a component of the animal's immune response to an E. canis vaccine; wherein the one or more purified polypeptides comprise SEQ ID NOs: 22, 23, 24, 24, 25, 27, 28, 29, 30, 31, 32, or 33, wherein the one or more purified polypeptides are 15 to 75 amino acids in length ; and (b) detecting whether antibodies in the biological sample specifically bind to the one or more purified E. canis polypeptides; wherein, if antibodies in the biological sample specifically bind to the one or more purified polypeptides, then the animal has been infected with E. canis.
 2. The method of claim 1, wherein the one or more purified polypeptides are linked to a heterologous amino acid sequence, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.
 3. The method of claim 1, wherein the method further comprises detecting the amount of specific binding.
 4. The method of claim 1, wherein the one or more purified polypeptides are immobilized to a solid support.
 5. A method for determining the presence or absence of an antibody or antigen-binding fragments thereof that are specific for E. canis, in a test sample, wherein the antibody or antigen-binding fragments specifically bind to one or more purified polypeptides consisting of the amino acid sequence set forth in SEQ ID NOs: 22-33 or combinations thereof comprising: (a) contacting the test sample with one or more purified polypeptides comprising SEQ ID NOs: 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, or 33 wherein the one or more purified polypeptides are 15 to 75 amino acids in length, and wherein the one or more purified polypeptides specifically bind an antibody that is specific for E. canis, under conditions suitable for specific binding of the one or more purified polypeptides to the antibodies or antigen-binding fragments thereof; and (b) detecting the presence of specific binding of the one or more purified polypeptides to the antibodies or antigen-binding fragments thereof; wherein the presence of specific binding of the one or more purified polypeptides to the antibodies or antigen-binding fragments indicates the presence of the antibodies or antigen-binding fragments thereof specific for E. canis in the test sample and wherein the absence of specific binding indicates the absence of the antibody or antigen binding fragments.
 6. The method of claim 5, wherein the one or more purified polypeptides are linked to a heterologous amino acid sequence, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.
 7. The method of claim 5, wherein the method further comprises detecting the amount of specific binding.
 8. The method of claim 5, wherein the one or more purified polypeptides are immobilized to a solid support.
 9. A method of distinguishing between an animal that has been infected with E. canis from an animal that has not been infected with E. canis, comprising: (a) contacting a biological sample from an animal with one or more purified polypeptides wherein the one or more purified polypeptides comprise SEQ ID NOs: 22, 23, 24, 25, 26, 27, 28, 30, 31, 32, or 33, wherein the one or more purified polypeptides are 15 to 75 amino acids in length ; and (b) detecting whether antibodies in the biological sample specifically bind to the one or more purified polypeptides; wherein, if antibodies in the biological sample specifically bind to the one or more purified polypeptides, then the animal has been infected with E. canis.
 10. The method of claim 9, wherein the one or more purified polypeptides are linked to a heterologous amino acid sequence, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.
 11. The method of claim 9, wherein the method further comprises detecting the amount of specific binding.
 12. The method of claim 9, wherein the one or more purified polypeptides are immobilized to a solid support. 